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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAGCTTTCGAGTTTGGGAAAACACATGTAGTGAGGCCAAAAGGAAAACATCAAGCCACTATAGTTTGGCTGCATGGTCTTGGTGATAATGGTTTGAGgtatggatgtcatcatctcttcaataatggcataggtcattctaacattgccacaactatcacttattcattcttgtactggttgttctatattctcttt...

Basic information

species Glycine max
transcript GLYMA13G43990.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G43990.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os04g09540.1 (Oryza sativa), 5'ss of exon 2
GAAGAGCTTTCGAGTTTGGGAAAACACATGTAGTGAGGCCAAAAGGAAAACATCAAGCCACTATAGTTTGGCTGCATGGTCTTGGTGATAATGGTTTGAGgtatggatgtcatcatctcttcaataatggcataggtcattctaacattgccacaactatcacttattcattcttgtact---ggttgttctatattctcttt---
|  |     |||||| |||||  ||  || ||||||||||||| ||||  || |||||||| || || ||||| |||||||| ||||| ||||||   ||||||  || |  |       |  |||     | ||  || |    | | |   |||   |  ||| || | || ||  |         |  ||  ||||   |   
GTCGGAGAGTCGAGTATGGGAGGACCTATATAGTGAGGCCAAAGGGAAGGCACCAAGCCACCATTGTGTGGCTCCATGGTCTAGGTGACAATGGTGCAAGgtatt-atatagtggctagcttgata----tacag-ccactgcctcttcgttccaaactttgcttgtttactcatgctccttcaagcatggtaccttctacctttt

upper sequence: GLYMA13G43990.2 (Glycine max), 5'ss of exon 3
lower sequence: AT1G52700.1 (Arabidopsis thaliana), 5'ss of exon 2
GAAGAGCTTTCGAGTTTGGGAAAACACATGTAGTGAGGCCAAAAGGAAAACATCAAGCCACTATAGTTTGGCTGCATGGTCTTGGTGATAATGGTTTGAGgtatggatgt---catcatctcttcaataatggcataggtcattctaacattgccacaactatcacttattcattcttgtactggttgttctatattctcttt
 ||| |  |  || ||||| |  ||  |||| |||||||| |||||||| |||||||||||| |||| ||||| |||||||||||||| ||||| |  ||||     | |   |||      ||| || ||        |  ||      ||   | ||  |  ||| |    ||   | |     |  ||  |  |   |  
CAAGGGGATATGAATTTGGAAGGACTTATGTTGTGAGGCCTAAAGGAAAGCATCAAGCCACTCTAGTCTGGCTTCATGGTCTTGGTGACAATGGCTCTAGgttacactcttcacatggctctttcgattattatgctttttttttgtgtcttaaaagaatcaa-actaacatcttgaagcataaactcctccgtggtgctt--

upper sequence: GLYMA13G43990.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv09s0002g06010.t01 (Vitis vinifera), 5'ss of exon 3
GAAGAGCTTTCGAGTTTGGGAAAACACATGTAGTGAGGCCAAAAGGAAAACATCAAGCCACTATAGTTTGGCTGCATGGTCTTGGTGATAATGGTTTGAGgtatggatgtcatcatctcttcaataatggcataggtcattctaacattgccacaactatcacttattcattcttgta-ctggttgttctata--ttctcttt-
||||  | || |||||||| |  |||||||| |||||||| || |||||||| || ||||| ||||||||||| ||||| |||||||| ||||| |  |||||| | ||   |  | |   || |  | ||||   || ||  ||||||  |     | ||  |    ||||||||||  | |  |||| ||   | |  ||| 
GAAGGACCTTTGAGTTTGGAAGGACACATGTGGTGAGGCCCAAGGGAAAACACCAGGCCACAATAGTTTGGCTACATGGCCTTGGTGACAATGGCTCAAGgtattgttgctgtt-ttttaccattgcttgcat---tcttttgaacattttctatgatttctttatagcattcttgtaattagaagttcaatgggtaccatttt