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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAGATCACATTTTTCTTTCTCGCGTCTGTTCTGAGACTGCCGGTGGCCTTCCAGgtctgtataacttgccatgttcaattgtttcttctttactgttaccggttagattggtgattcatgtacaagggcctttaaatattttttcttcaactcgcag

Basic information

species Glycine max
transcript GLYMA13G43270.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G43270.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv09s0002g04000.t01 (Vitis vinifera), 5'ss of exon 4
ATAGATCACATTTTTCTTTCTCGCGTCTGTTCTGAGACTGCCGGTGGCCTTCCAGgtctgtataacttgccatgttcaattgtttcttcttt--actgt-taccggttagattggtgattcatgtacaagggcc----tttaaatattttttcttcaac-tcgcag---------------------------------------------------------------------------------
|| |||||||| ||||| ||||| ||||| ||||| || || ||||| |||||||||||||     |     | |||  |   ||   |||   ||||| | ||  ||| |   |     ||| |  ||    |    |  ||  |  |||||   | | |  |                                                                                   
ATTGATCACATATTTCTGTCTCGTGTCTGCTCTGAAACGGCTGGTGGACTTCCAGgtctgtgcc-ttcatggtcttctttaagttgcacttgcaactgtgttccacttataaaaggagaacatttgaaatactcggggtggaatcacattttcaaaagcattactactctacttcattttttgattttgatgcaaagtgaggactgcaagagaaactgaattgttccattgttactctatatcgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209725282|gb|BW672759.1|BW672759
EST:     TCACATTTTTCTTTCTCGCGTCTGTTCTGAGACTGCCGGTGGCCTTCCAG                         GTTTACTTCTTACTTTGGCTGGCATGGGAGAAGAAGGGATGTCT
genomic: TCACATTTTTCTTTCTCGCGTCTGTTCTGAGACTGCCGGTGGCCTTCCAGgtctgtataa ... caactcgcagGTTTACTTCTTACTTTGGCTGGCATGGGAGAAGAAGGGATGTCT