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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGGTGTTCCAATAGGGAGAAAAGTGGACCTCAATGCTTACGACAGCTATGAAAACCTCTCTTCTGCTGTGGACGAGCTATTCAGAGGTCTTCTTGCTGgtaatttttgtgacactcaaattctgggattgtttattctcttgtagttgatataaatcatccttgtgtggacatttttttgtttactactcttgattga...

Basic information

species Glycine max
transcript GLYMA13G43050.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G43050.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv09s0002g03410.t01 (Vitis vinifera), 5'ss of exon 4
GATGGTGTTCCAATAGGGAGAAAAGTGGACCTCAATGCTTACGACAGCTATGAAAACCTCTCTTCTGCTGTGGACGAGCTATTCAGAGGTCTTCTTGCTGgtaatttttgtgacactcaaattctgggattgtttattctc-ttgtagtt-gatataa-atcatccttgtgtggacatttttttgtttactactcttgattga
||||| |||||||| ||||| || |||||||| |  || || |||||||||||||| || || |||||||| || ||||||||||| || ||||| || ||| | ||      || ||  ||| |   |   |    | |  || |  || |  || | | ||||    | ||    | |  ||||||  |    || |    
GATGGAGTTCCAATTGGGAGGAAGGTGGACCTTACAGCATATGACAGCTATGAAAAACTTTCATCTGCTGTTGATGAGCTATTCAGGGGCCTTCTAGCAGgttacttc-acatcattccgattttcaaagcatccggtttaattatgttttggaatgataacatctcattatgtttgtctcattgttttttgtgttttag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22928435|gb|BU545574.1|BU545574
EST:     GCTGTGGACGAGCTATTCAGAGGTCTTCTTGCTG                         CTCAAAGAGATTCCTCTGCTGGTGGGGTTCACAACAAGCAGGAGGAAGAGA
genomic: GCTGTGGACGAGCTATTCAGAGGTCTTCTTGCTGgtaatttttg ... tgctgttcagCTCAAAGAGATTCCTCTGCTGGTGGGGTTCACAACAAGCAGGAGGAAGAGA
EST: gi|192297031|gb|FG990317.1|FG990317
EST:     TGAAAACCTCTCTTCTGCTGTGGACGAGCTATTCAGAGGTCTTCTTGCTG                         CTCAAAGAGATTCCTCTGCTGGTGGGGTTCACAACAAGCAGGAGGAAGAGA
genomic: TGAAAACCTCTCTTCTGCTGTGGACGAGCTATTCAGAGGTCTTCTTGCTGgtaatttttg ... tgctgttcagCTCAAAGAGATTCCTCTGCTGGTGGGGTTCACAACAAGCAGGAGGAAGAGA
EST: gi|302141315|gb|HO212191.1|HO212191
EST:     TGAAAACCTCTCTTCTGCTGTGGACGAGCTATTCAGAGGTCTTCTTGCTG                         CTCAAAGAGATTCCTCTGCTGGTGGGGTTCACAACAAGCAGGAGGAAGAGA
genomic: TGAAAACCTCTCTTCTGCTGTGGACGAGCTATTCAGAGGTCTTCTTGCTGgtaatttttg ... tgctgttcagCTCAAAGAGATTCCTCTGCTGGTGGGGTTCACAACAAGCAGGAGGAAGAGA
EST: gi|192308530|gb|FK002426.1|FK002426
EST:     TGAAAACCTCTCTTCTGCTGTGGACGAGCTATTCAGAGGTCTTCTTGCTG                         CTCAAAGAGATTCCTCTGCTGGTGGGGTTCACAACAAGCAGGAGGAAGAGA
genomic: TGAAAACCTCTCTTCTGCTGTGGACGAGCTATTCAGAGGTCTTCTTGCTGgtaatttttg ... tgctgttcagCTCAAAGAGATTCCTCTGCTGGTGGGGTTCACAACAAGCAGGAGGAAGAGA
EST: gi|7692407|gb|AW760514.1|AW760514
EST:     TGAAAACCTCTCTTCTGCTGTGGACGAGCTATTCAGAGGTCTTCTTGCTG                         CTCAAAGAGATTCCTCTGCTGGTGGGGTTCACAACAAGCAGGAGGAAGAGA
genomic: TGAAAACCTCTCTTCTGCTGTGGACGAGCTATTCAGAGGTCTTCTTGCTGgtaatttttg ... tgctgttcagCTCAAAGAGATTCCTCTGCTGGTGGGGTTCACAACAAGCAGGAGGAAGAGA
EST: gi|5058123|gb|AI736599.1|AI736599
EST:     TGAAAACCTCTCTTCTGCTGTGGACGAGCTATTCAGAGGTCTTCTTGCTG                         CTCAAAGAGATTCCTCTGCTGGTGGGGTTCACAACAAGCAGGAGGAAGAGA
genomic: TGAAAACCTCTCTTCTGCTGTGGACGAGCTATTCAGAGGTCTTCTTGCTGgtaatttttg ... tgctgttcagCTCAAAGAGATTCCTCTGCTGGTGGGGTTCACAACAAGCAGGAGGAAGAGA
EST: gi|13312662|gb|BG406313.1|BG406313
EST:     CTCTCTTCTGCTGTGGACGAGCTATTCAGAGGTCTTCTTGCTG                         CTCAAA-AGATTCCTCTGCTGGTGGGGTTCACAACAAGCAGGAGGAAGAGA
genomic: CTCTCTTCTGCTGTGGACGAGCTATTCAGAGGTCTTCTTGCTGgtaatttttg ... tgctgttcagCTCAAAGAGATTCCTCTGCTGGTGGGGTTCACAACAAGCAGGAGGAAGAGA