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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGAAATTCCAAAGACTGCTCTTGTTTGGTCCCTAACTCATGTTGTGCAACCTGGCGATTGCATTACACTGCTAGTGGTTGTACCTTCACAAAGTGCAGgtaatccatttttcgccttcatttgtttatctatgtgctctttttgtcagatattctttattgccgtatggtaattttgatgcctatgttcttacaagta...

Basic information

species Glycine max
transcript GLYMA13G42760.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G42760.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv09s0002g02420.t01 (Vitis vinifera), 5'ss of exon 1
AAGGAAATTCCAAAGACTGCTCTTGTTTGGTCCCTAACTCATGTTGTGCAACCTGGCGATTGCATTACACTGCTAGTGGTTGTACCTTCACAAAGTGCAGgtaatccatttttcgccttcatttgtttatctatgtgctctttttgtcagatattctttattgccgtatggtaattttgatg----cctatgttcttacaagta-
|  ||||| || || |||||||| || ||| || |||||||||||||||| ||||| ||||||||||| ||||| || || || ||| |||||||  ||||||  ||  ||| ||| ||||  ||||    |   | |  |  |||  |  | | | |  |   | |||| |  || |   |    | ||     | |  | |  
AGAGAAATCCCGAAAACTGCTCTGGTATGGGCCTTAACTCATGTTGTGCAGCCTGGGGATTGCATTACTCTGCTTGTTGTCGTCCCTGCACAAAGCCCAGgtatacc--tttgcgctttca--tgttggattg-attccttgattggaatgtttccatattaatcatatgttctttctagggagagcatagaaaatgaagaatgt