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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAACAACATGTCTTATTGGGCACCAGGTGGAAGTCCAGGTGAAAAATGGATCCATATACTCTGGAATATTTCATGCAACAAACACAGACAAAGATTTTGgtatgttctgttgcatttttttaaattgattttggtcatatcgaagactattgttttgaattatttcacagttaactgaagcaaaatagataagcatgct...

Basic information

species Glycine max
transcript GLYMA13G42230.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G42230.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM5G829738_T01 (Zea mays), 5'ss of exon 3
GTAACAACATGTCTTATTGGGCACCAGGTGGAAGTCCAGGTGAAAAATGGATCCATATACTCTGGAATATTTCATGCAACAAACACAGACAAAGATTTTGgta-tgttctgttgcatttttttaaat--tgattttggtcatatcgaagact-attgttttgaattatttcacagttaac-tgaagcaaaatag-ataagcatgct---------------------------
||   ||||   ||||||||||| || ||||| || || ||||| || || || |||  ||||||||| || |||||||||||| | |||||||| ||||||| |  ||| ||   |||| | |  |  |||  | | |  |||  |    | |  |||||  |||    ||| |||    ||||    | | | |||  ||| |                            
GTTCTAACACAACTTATTGGGCATCATGTGGACGTGCATGTGAATAACGGCTCTATAATCTCTGGAATTTTCCATGCAACAAACCCTGACAAAGACTTTGgtactcctctatttttttttctcagttcctgacatagcttttatgaatcctttacagttttctatttgagcaccgtttttgtgaattgtattggcatattcattcaatacttaacttcaagattctcctacag

upper sequence: GLYMA13G42230.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv09s0002g01560.t01 (Vitis vinifera), 5'ss of exon 3
GTAACAACATGTCTTATTGGGCACCAGGTGGAAGTCCAGGTGAAAAATGGATCCATATACTCTGGAATATTTCATGCAACAAACACAGACAAAGATTTTGgtatgttctgttgcatttttttaaattgattttggtcata--tcgaagactattgttttgaa-ttatttcacagtt-aactgaagcaaaatagataagcatgct---------------------------------------
 ||||||||||| ||||||| |  |  |||||||||||||| ||||||||||| |||   |||||||||||||||||||||||| | ||||| ||||| |||||| |       |||     |   |   ||   |||||  |         ||   ||||  || ||||| | |  ||   |  |    |  |      ||||                                       
TTAACAACATGTTTTATTGGACTTCCCGTGGAAGTCCAGGTCAAAAATGGATCTATAATTTCTGGAATATTTCATGCAACAAACGCTGACAAGGATTTCGgtatggttcaagagattacacaattgtcccttgcatcataattttgtattggttcccttgaccttctttcaaaatccaagcaattctgttttcagccatttgctcataaaggttttagcattcactttgctcataacttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192298181|gb|FG991686.1|FG991686
EST:     ATCCATATACTCTGGAATATTTCATGCAACAAACACAGACAAAGATTTTG                         GAATCATTTTAAAAATGGCTCGTTTAACTAAGGATGGTTCTTTACGAGGAC
genomic: ATCCATATACTCTGGAATATTTCATGCAACAAACACAGACAAAGATTTTGgtatgttctg ... cttgtcatagGAATCATTTTAAAAATGGCTCGTTTAACTAAGGATGGTTCTTTACGAGGAC
EST: gi|193568120|gb|FK523855.1|FK523855
EST:     ATCCATATACTCTGGAATATTTCATGCAACAAACACAGACAAAGATTTTG                         GAATCATTTTAAAAATGGCTCGTTTAACTAAGGATGGTTCTTTACGAGGAC
genomic: ATCCATATACTCTGGAATATTTCATGCAACAAACACAGACAAAGATTTTGgtatgttctg ... cttgtcatagGAATCATTTTAAAAATGGCTCGTTTAACTAAGGATGGTTCTTTACGAGGAC
EST: gi|208078310|gb|GD877970.1|GD877970
EST:     ATCCATATACTCTGGAATATTTCATGCAACAAACACAGACAAAGATTTTG                         GAATCATTTTAAAAATGGCTCGTTTAACTAAGGATGGTTCTTTACGAGGAC
genomic: ATCCATATACTCTGGAATATTTCATGCAACAAACACAGACAAAGATTTTGgtatgttctg ... cttgtcatagGAATCATTTTAAAAATGGCTCGTTTAACTAAGGATGGTTCTTTACGAGGAC
EST: gi|14126377|gb|BG790815.1|BG790815
EST:     ATCCATATACTCTGGAATATTTCATGCAACAAACACAGACAAAGATTTTG                         GAATCATTTTAAAAATGGCTCGTTTAACTAAGGATGGTTCTTTACGAGGAC
genomic: ATCCATATACTCTGGAATATTTCATGCAACAAACACAGACAAAGATTTTGgtatgttctg ... cttgtcatagGAATCATTTTAAAAATGGCTCGTTTAACTAAGGATGGTTCTTTACGAGGAC