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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGAAGAACTCCGGAAATCTTCCATGGGTGCAAGAGCTACAGATTCTGCAAGAGTTATGAAGTTCACTAAGGTGCTTTCAGAGACAATGGTTAAATTAGgtattttaacttctgtatttcaattttggtttctatatcacttattgacttattcctcgttgctcctttatggccacttcagttattgaagtgccatatt...

Basic information

species Glycine max
transcript GLYMA13G42180.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G42180.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv05s0094g00070.t01 (Vitis vinifera), 5'ss of exon 3
TCTGAAGAACTCCGGAAATCTTCCATGGGTGCAAGAGCTACAGATTCTGCAAGAGTTATGAAGTTCACTAAGGTGCTTTCAGAGACAATGGTTAAATTAGgtatt---ttaacttctgtatttcaattttggtttctatatcacttattgacttatt--cctcgttgctcctttatggccacttcagttattgaagtgccatatt
 |  ||||  | | ||||||  | |||||||| |||||||||||||| ||||| |||||||||||||| |||| ||| || | | |||  || | ||||||||||   |||   | ||||  |  | ||  |||||| |  || | ||   || |    | |   |    |  | |   ||  |||| ||     | |||     
CCCAAAGACGTTCCGAAATCCACAATGGGTGCTAGAGCTACAGATTCAGCAAGGGTTATGAAGTTCACAAAGGAGCTATCCGGGCCAACTGTCATATTAGgtattgctttattgtttgtacattcacttctgtttctgtcccattgataatctaaggagcatacatatgtcaatgtatacatctcagatacaatggggcc-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6567298|gb|AW234909.1|AW234909
EST:     AAGAGTTATGAAGTTCACTAAGGTGCTTTCAGAGACAATGGTTAAATTAG                         AGAAATTGCGTGAATTTTCTTGGAGGGGTGTTCCAGATTATATGCGTCCTA
genomic: AAGAGTTATGAAGTTCACTAAGGTGCTTTCAGAGACAATGGTTAAATTAGgtattttaac ... tatcctgtagAGAAATTGCGTGAATTTTCTTGGAGGGGTGTTCCAGATTATATGCGTCCTA
EST: gi|10842804|gb|BF066222.1|BF066222
EST:     AAGAGTTATGAAGTTCACTAAGGTGCTTTCAGAGACAATGGTTAAATTAG                         AGAAATTGCGTGAATTTTCTTGGAGGGGTGTTCCAGATTATATGCGTCCTA
genomic: AAGAGTTATGAAGTTCACTAAGGTGCTTTCAGAGACAATGGTTAAATTAGgtattttaac ... tatcctgtagAGAAATTGCGTGAATTTTCTTGGAGGGGTGTTCCAGATTATATGCGTCCTA
EST: gi|13312508|gb|BG406159.1|BG406159
EST:     AAGAGTTATGAAGTTCACTAAGGTGCTTTCAGAGACAATGGTTAAATTAG                         AGAAATTGCGTGAATTTTCTTGGAGGGNGTGTTCCAGATTATATGCGTCCT
genomic: AAGAGTTATGAAGTTCACTAAGGTGCTTTCAGAGACAATGGTTAAATTAGgtattttaac ... tatcctgtagAGAAATTGCGTGAATTTTCTTGGAGGG-GTGTTCCAGATTATATGCGTCCT