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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGTTGGCTAACTTGGTTGGTTGTTGCTGTGAAGGGGAAGAGAGATTGCTTGTTGCTGAGTTTATGCCAAATGAAACTCTCTCCAAACATCTCTTTCACTgtgagtttacacacaccgtcatgcatttcttcaactggtaaacagaatgctgacaatgatggatatggattgatgccacattttgtttaataaactaaat...

Basic information

species Glycine max
transcript GLYMA13G41600.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G41600.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0004g05810.t01 (Vitis vinifera), 5'ss of exon 3
CGGTTGGCTAACTTGGTTGGTTGTTGCTGTGAAGGGGAAGAGAGATTGCTTGTTGCTGAGTTTATGCCAAATGAAACTCTCTCCAAACATCTCTTTCACTgtgagtttacacacaccgtcatgcatttcttcaactggtaaacagaatgctgacaatgatggatatggattgatgccacattttgtttaataaactaaat-
|| ||||| || ||| |||| ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| || || || || || ||| | |||       |  |  |  | |   ||      |   |  | || |   | |  | |   |  | || |    ||| |  | | |    ||   | 
CGATTGGCAAATTTGATTGGATGTTGCTGTGAAGGGGAAGAGAGATTGCTTGTTGCGGAGTTCATGCCTAATGAAACTCTCTCAAAGCACCTTTTCCATTgtaaatttctttcaccaattctttagtagatctctctctcttcttattgtttgaatttgttgcggtaaaatg-tattgcatataatgtgaatggctttttg

upper sequence: GLYMA13G41600.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S9_348V6.1 (Physcomitrella patens), 5'ss of exon 3
CGGTTGGCTAACTTGGTTGGTTGTTGCTGTGAAGGGGAAGAGAGATTGCTTGTTGCTGAGTTTATGCCAAATGAAACTCTCTCCAAACATCTCTTTCACTgtgagt-ttacacacaccgtcatgcatttcttcaactggtaaacagaatgctgacaatgatggatatggattgatgccacattttgtttaataaactaaat--
 |  |||  || ||| |||| |  ||||||||||| || ||| | ||||||||||| |||| |||||| ||||| |||||  | |||||| | ||||||||| ||| | | |     |||  || |   |||||      |  ||      |  |   ||  ||  ||| |||   ||  | |||  |     || |   |  
AGACTGGTGAATTTGATTGGATACTGCTGTGAAGGTGATGAGCGTTTGCTTGTTGCGGAGTATATGCCGAATGACACTCTTGCGAAACATTTGTTTCACTgtaagtgtcatatttgtcgt-gtggaagccttcattacagaggcaattcattttcttcga--gaggtggtttgtaacctaacttttctgtgagaaatgtgttg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6747735|gb|AW318191.1|AW318191
EST:     TGTTGCTGAGTTTATGCCAAATGAAACTCTCTCCAAACATCTCTTTCACT                         GGGAGAGCCAGCCAATGAAATGGGCAATGAGGCTGAGAGTGGCCTTGTATT
genomic: TGTTGCTGAGTTTATGCCAAATGAAACTCTCTCCAAACATCTCTTTCACTgtgagtttac ... aatctggtagGGGAGAGCCAGCCAATGAAATGGGCAATGAGGCTGAGAGTGGCCTTGTATT