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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTTGCTGCTGGTTTGATGCTTAGCATATCGTTCTTTGATTTGGCTCACAATGCTTTGAACTCATTGGGCTTCTTGAAAGGCAACCTTTGGgtaggttttgcacttcagctgtcataaacaagtcatctaacagcaatgtttttctcttgtatcatcttctctcttgtgatgttagttctgaccagatgttccatcttctcattcatgtag

Basic information

species Glycine max
transcript GLYMA13G41580.5
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G41580.5 (Glycine max), 5'ss of exon 3
lower sequence: AT3G20870.1 (Arabidopsis thaliana), 5'ss of exon 3
GGTTTTGCTGCTGGTTTGATGCTTAGCATATCGTTCTTTGATTTGGCTCACAATGCTTTGAACTCATTGGGCTTCTTGAAAGGCAACCTTTGGgtaggttttgcacttcagctgtcataaacaagtcatctaacagcaatgtttttctcttgtatcatcttctctcttgtgatgttagttctgaccagatgttccatcttctcattcatgtag
||||||||| | ||| ||||| | |||||||||||||| ||||||||||| |||||| | |||||  | || ||||| |||| |||||| |||||  ||     |||||   ||||     ||  |  |    |||   | ||| |   |   || || |  |   || |    ||    ||||  |  |  |  |  ||   | | ||| ||
GGTTTTGCTTCAGGTCTGATGTTGAGCATATCGTTCTTGGATTTGGCTCATAATGCTATAAACTCTATTGGGTTCTTTAAAGCCAACCTCTGGgttagt-----acttc---tgtc-----catcttgtacttcagtggtttttgttattcaaataatatgtttatttat----ttcacactga--aagtaatatagttttctagtgatgcag

upper sequence: GLYMA13G41580.5 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0004g01860.t01 (Vitis vinifera), 5'ss of exon 3
GGTTTTGCTGCTGGTTTGATGCTTAGCATATCGTTCTTTGATTTGGCTCACAATGCTTTGAACTCATTGGGCTTCTTGAAAGGCAACCTTTGGgtaggttttgcacttcagctgtcataaacaagtcatctaacagcaatgtttttctcttgtatcatcttctctcttgtgatgttagttctgaccagatgttccatcttctcattcatgtag
|| |||||||| ||  | ||||| |||||||| ||| | ||||||||||| ||||||||||||||  | |||||||| ||||| |||||||||||  | |||   |||   | ||  | |||      |  ||   ||   ||||  |    || |  | | |   || |||  | | ||        ||   ||||                
GGATTTGCTGCAGGCCTCATGCTGAGCATATCTTTCCTAGATTTGGCTCATAATGCTTTGAACTCCATCGGCTTCTTAAAAGGAAACCTTTGGgtgagctttcttctttgtcagtgtttaac------ttcaaatccatcattttgttaacataactccattttgattttgaaatcaattgcctattcattgaccatgcag------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192300198|gb|FG989320.1|FG989320
EST:     TGGCTCACAATGCTTTGAACTCATTGGGCTTCTTGAAAGGCAACCTTTGG                         TTTTTTGCTGGGGTAATATTCTTTGCTGTTGTTGCCAGTTTTATCCCAGAG
genomic: TGGCTCACAATGCTTTGAACTCATTGGGCTTCTTGAAAGGCAACCTTTGGgtaggttttg ... attcatgtagTTTTTTGCTGGGGTAATATTCTTTGCTGTTGTTGCCAGTTTTATCCCAGAG
EST: gi|298174471|gb|HO014616.1|HO014616
EST:     TGGCTCACAATGCTTTGAACTCATTGGGCTTCTTGAAAGGCAACCTTTGG                         TTTTTTGCTGGGGTAATATTCTTTGCTGTTGTTGCCAGTTTTATCCCAGAG
genomic: TGGCTCACAATGCTTTGAACTCATTGGGCTTCTTGAAAGGCAACCTTTGGgtaggttttg ... attcatgtagTTTTTTGCTGGGGTAATATTCTTTGCTGTTGTTGCCAGTTTTATCCCAGAG
EST: gi|213617692|gb|DB967222.1|DB967222
EST:     TGGCTCACAATGCTTTGAACTCATTGGGCTTCTTGAAAGGCAACCTTTGG                         TTTTTTGCTGGGGTAATATTCTTTGCTGTTGTTGCCAGTTTTATCCCAGAG
genomic: TGGCTCACAATGCTTTGAACTCATTGGGCTTCTTGAAAGGCAACCTTTGGgtaggttttg ... attcatgtagTTTTTTGCTGGGGTAATATTCTTTGCTGTTGTTGCCAGTTTTATCCCAGAG
EST: gi|298198295|gb|HO039834.1|HO039834
EST:     TGGCTCACAATGCTTTGAACTCATTGGGCTTCTTGAAAGGCAACCTTTGG                         TTTTTTGCAGGGGTAATATTCTTTGCTGTTGTTGCCAGTTTTATCCCAGAG
genomic: TGGCTCACAATGCTTTGAACTCATTGGGCTTCTTGAAAGGCAACCTTTGGgtaggttttg ... attcatgtagTTTTTTGCTGGGGTAATATTCTTTGCTGTTGTTGCCAGTTTTATCCCAGAG
EST: gi|192323380|gb|FK017081.1|FK017081
EST:     TGGCTCACAATGCTTTGAACTCATTGGGCTTCTTGAAAGGCAACCTTTGG                         TTTTT-GCTGGGGTAATATTCTTTGCTGTTGTTGCCAGTTTTATCCCAGAG
genomic: TGGCTCACAATGCTTTGAACTCATTGGGCTTCTTGAAAGGCAACCTTTGGgtaggttttg ... attcatgtagTTTTTTGCTGGGGTAATATTCTTTGCTGTTGTTGCCAGTTTTATCCCAGAG
EST: gi|298167335|gb|HO010774.1|HO010774
EST:     TGGCTCACAATGCTTTGAACTCATTGGGCTTCTTGAAAGGCAACCTTTGG                         TTTTTTGCTGGGGTAATATTCTTTGCTGTTGTTGCCAGTTTTATCCCAGAG
genomic: TGGCTCACAATGCTTTGAACTCATTGGGCTTCTTGAAAGGCAACCTTTGGgtaggttttg ... attcatgtagTTTTTTGCTGGGGTAATATTCTTTGCTGTTGTTGCCAGTTTTATCCCAGAG