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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTAGCAATGAGGGAGATGATGTTTTCTTATGTGAGTATGAGTATGACATCCATTGGCACAGCTTCAAACGTCTTGCTGACATTGACAATGAAACAGAGgtaatcaaatcagaatattagcaagatccttcttatgaaagaaaagagttgaccatttaacagtgccagtattgatgagtttattcttgtttggtag

Basic information

species Glycine max
transcript GLYMA13G41490.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G41490.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0004g00530.t01 (Vitis vinifera), 5'ss of exon 3
AGCTAGCAATGAGGGAGATGATGTTTTCTTATGTGAGTATGAGTATGACATCCATTGGCACAGCTTCAAACGTCTTGCTGACATTGACAATGAAACAGAGgtaatcaaatcagaatattagcaagatccttcttatgaaagaaaagagttgaccatttaacagtgccagtattgatgagtttatt--cttgtttggtag
 || |  ||||| || |||||| ||||||||||||| ||||| |||||||| ||||||||||| ||||| |||||||| || ||  | ||||    ||| ||||        |||| ||||  |        |      || ||   |  ||  |||      |       || ||| | ||| |  ||  ||||  ||
GGCCAATAATGAAGGTGATGATATTTTCTTATGTGAATATGAATATGACATGCATTGGCACAGTTTCAAGCGTCTTGCAGAGATCAATAATGGTGAAGAAgtaa--------gaattttagacaa-------tcgaagtagcaatttgaggattattgtgttctcttctagtttatgggcttactatctcatttgtcag

upper sequence: GLYMA13G41490.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0004g02050.t01 (Vitis vinifera), 5'ss of exon 4
AGCTAGCAATGAGGGAGATGATGTTTTCTTATGTGAGTATGAGTATGACATCCATTGGCACAGCTTCAAACGTCTTGCTGACATTGACAATGAAACAGAGgtaatcaaatcagaatattagcaagatccttcttatgaaagaaaagagttgaccatttaacagtgccagtattgatgagtttatt--cttgtttggtag
 || |  ||||| || |||||| ||||||||||||| ||||| |||||||| ||||||||||| ||||| |||||||| || ||  | ||||    ||| ||||  |  | |||  || |    |    ||         ||  |   |||     |      | | ||| |  ||| | ||  |  ||  ||||  ||
GGCCAATAATGAAGGTGATGATATTTTCTTATGTGAATATGAATATGACATACATTGGCACAGTTTCAAGCGTCTTGCAGAGATCAATAATGGTGAAGAAgtaagaattttagacaatcaaagtggcatttt--------gaggattattgtgttctc-----ttctagttt--atgggcttgctatctcatttgtcag