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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAATATCTCAAGTCATGATTTCGAGAAAACGgtaagttcgcgatttaacgttgtaattcgtgctattgatgtttttaggtgatgacatctacaatttcactatgtagattggtatattgttgtcagttttt...

Basic information

species Glycine max
transcript GLYMA13G41110.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151393247|gb|EV263122.1|EV263122
EST:     GGAATATCTCAAGTCATGATTTCGAGAAAACG                         TTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
genomic: GGAATATCTCAAGTCATGATTTCGAGAAAACGgtaagttcgc ... gttgttgcagTTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
EST: gi|7145805|gb|AW507727.1|AW507727
EST:     GGAATATCTCAAGTCATGATTTCGAGAAAACG                         TTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
genomic: GGAATATCTCAAGTCATGATTTCGAGAAAACGgtaagttcgc ... gttgttgcagTTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
EST: gi|207836538|gb|GD805751.1|GD805751
EST:     GGAATATCTCAAGTCATGATTTCGAGAAAACG                         TTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
genomic: GGAATATCTCAAGTCATGATTTCGAGAAAACGgtaagttcgc ... gttgttgcagTTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
EST: gi|298163842|gb|HO012575.1|HO012575
EST:     GGAATATCTCAAGTCATGATTTCGAGAAAACG                         TTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
genomic: GGAATATCTCAAGTCATGATTTCGAGAAAACGgtaagttcgc ... gttgttgcagTTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
EST: gi|193333062|gb|FK300808.1|FK300808
EST:     GGAATATCTCAAGTCATGATTTCGAGAAAACG                         TTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
genomic: GGAATATCTCAAGTCATGATTTCGAGAAAACGgtaagttcgc ... gttgttgcagTTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
EST: gi|209698806|gb|BW675734.1|BW675734
EST:     GGAATATCTCAAGTCATGATTTCGAGAAAACG                         TTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
genomic: GGAATATCTCAAGTCATGATTTCGAGAAAACGgtaagttcgc ... gttgttgcagTTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
EST: gi|208084381|gb|GD880551.1|GD880551
EST:     TCATGATTTCGAGAAAACG                         TTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
genomic: TCATGATTTCGAGAAAACGgtaagttcgc ... gttgttgcagTTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
EST: gi|193711572|gb|FK643037.1|FK643037
EST:     GGAATATCTCAAGTCATGATTTCGAGAAAACG                         TTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
genomic: GGAATATCTCAAGTCATGATTTCGAGAAAACGgtaagttcgc ... gttgttgcagTTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
EST: gi|298164926|gb|HO010923.1|HO010923
EST:     GGAATATCTCAAGTCATGATTTCGAGAAAACG                         TTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
genomic: GGAATATCTCAAGTCATGATTTCGAGAAAACGgtaagttcgc ... gttgttgcagTTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
EST: gi|9205325|gb|BE331549.1|BE331549
EST:     GGAATATCTCAAGTCATGATTTCGAGAAAACG                         TTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
genomic: GGAATATCTCAAGTCATGATTTCGAGAAAACGgtaagttcgc ... gttgttgcagTTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
EST: gi|192326268|gb|FK015845.1|FK015845
EST:     GGAATATCTCAAGTCATGATTTCGAGAAAACG                         TTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
genomic: GGAATATCTCAAGTCATGATTTCGAGAAAACGgtaagttcgc ... gttgttgcagTTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
EST: gi|15663192|gb|BI700563.1|BI700563
EST:     GGAATATCTCAAGTCATGATTTCGAGAAAACG                         TTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
genomic: GGAATATCTCAAGTCATGATTTCGAGAAAACGgtaagttcgc ... gttgttgcagTTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
EST: gi|254346962|gb|GR856684.1|GR856684
EST:     GGAATATCTCAAGTCATGATTTCGAGAAAACG                         TTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
genomic: GGAATATCTCAAGTCATGATTTCGAGAAAACGgtaagttcgc ... gttgttgcagTTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
EST: gi|298163921|gb|HO013566.1|HO013566
EST:     GGAATATCTCAAGTCATGATTTCGAGAAAACG                         TTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
genomic: GGAATATCTCAAGTCATGATTTCGAGAAAACGgtaagttcgc ... gttgttgcagTTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
EST: gi|254344721|gb|GR851311.1|GR851311
EST:     GGAATATCTCAAGTCATGATTTCGAGAAAACG                         TTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
genomic: GGAATATCTCAAGTCATGATTTCGAGAAAACGgtaagttcgc ... gttgttgcagTTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
EST: gi|151400903|gb|EV270717.1|EV270717
EST:     GGAATATCTCAAGTCATGATTTCGAGAAAACG                         TTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
genomic: GGAATATCTCAAGTCATGATTTCGAGAAAACGgtaagttcgc ... gttgttgcagTTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
EST: gi|21888132|gb|BQ741345.1|BQ741345
EST:     GGAATATCTCAAGTCATGATTTCGAGAAAACG                         TTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
genomic: GGAATATCTCAAGTCATGATTTCGAGAAAACGgtaagttcgc ... gttgttgcagTTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
EST: gi|298175659|gb|HO015178.1|HO015178
EST:     GGAATATCTCAAGTCATGATTTCGAGAAAACG                         TTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
genomic: GGAATATCTCAAGTCATGATTTCGAGAAAACGgtaagttcgc ... gttgttgcagTTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
EST: gi|254346963|gb|GR856685.1|GR856685
EST:     GGAATATCTCAAGTCATGATTTCGAGAAAACG                         TTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
genomic: GGAATATCTCAAGTCATGATTTCGAGAAAACGgtaagttcgc ... gttgttgcagTTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
EST: gi|10256009|gb|BE823775.1|BE823775
EST:     GGAATATCTCAAGTCATGATTTCGAGAAAACG                         TTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
genomic: GGAATATCTCAAGTCATGATTTCGAGAAAACGgtaagttcgc ... gttgttgcagTTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
EST: gi|192323064|gb|FK016315.1|FK016315
EST:     GGAATATCTCAAGTCATGATTTCGAGAAAACG                         TTGAAGAAGATGTGCAGAGAAGGTGTATATTGGG
genomic: GGAATATCTCAAGTCATGATTTCGAGAAAACGgtaagttcgc ... gttgttgcagTTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
EST: gi|208084810|gb|GD881064.1|GD881064
EST:     GGAATATCTCAAGTCATGATTTCGAGAAAAACG                         TTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
genomic: GGAATATCTCAAGTCATGATTTCGAGAAAA-CGgtaagttcgc ... gttgttgcagTTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
EST: gi|6454783|gb|AW185466.1|AW185466
EST:     GGAATATCTCAAGTCATGATTTCGAGAAAACG                         TTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
genomic: GGAATATCTCAAGTCATGATTTCGAGAAAACGgtaagttcgc ... gttgttgcagTTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
EST: gi|192326659|gb|FK017316.1|FK017316
EST:     GGAATATCTCAAGTCATGATTTCGAGAAAACG                         TTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
genomic: GGAATATCTCAAGTCATGATTTCGAGAAAACGgtaagttcgc ... gttgttgcagTTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
EST: gi|209698805|gb|BW675733.1|BW675733
EST:     GGAATATCTCAAGTCATGATTTCGAGAAAACG                         TTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
genomic: GGAATATCTCAAGTCATGATTTCGAGAAAACGgtaagttcgc ... gttgttgcagTTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
EST: gi|208149896|gb|GD944218.1|GD944218
EST:     GGAATATCTCAAGTCATGATTTCGAAGAAAACG                         TTGAAGAAGATGTG
genomic: GGAATATCTCAAGTCATGATTTCGA-GAAAACGgtaagttcgc ... gttgttgcagTTGAAGAAGATGTG
EST: gi|298197536|gb|HO045015.1|HO045015
EST:     GGAATATCTCAAGTCATGATTTCGAGAAAACG                         TTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
genomic: GGAATATCTCAAGTCATGATTTCGAGAAAACGgtaagttcgc ... gttgttgcagTTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
EST: gi|193351154|gb|FK316730.1|FK316730
EST:     TCATGATTTCGAGAAAACG                         TTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
genomic: TCATGATTTCGAGAAAACGgtaagttcgc ... gttgttgcagTTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
EST: gi|298195162|gb|HO043690.1|HO043690
EST:     GGAATATCTCAAGTCATGACTTCGAGAAAACG                         TTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
genomic: GGAATATCTCAAGTCATGATTTCGAGAAAACGgtaagttcgc ... gttgttgcagTTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
EST: gi|151395761|gb|EV265638.1|EV265638
EST:     GGAATATCTCAAGTCATGATTTCGAGAAAACG                         TTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
genomic: GGAATATCTCAAGTCATGATTTCGAGAAAACGgtaagttcgc ... gttgttgcagTTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
EST: gi|298171379|gb|HO016411.1|HO016411
EST:     GGAATATCTCAAGTCATGATTTCGAGAAAACG                         TTGAGGAAGATGTGCAAAGAAGGTGTATATTGGG
genomic: GGAATATCTCAAGTCATGATTTCGAGAAAACGgtaagttcgc ... gttgttgcagTTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
EST: gi|208294332|gb|GE092163.1|GE092163
EST:     GGAATATCTCAAGTCATGATTTCGAGAAAACG                         TTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
genomic: GGAATATCTCAAGTCATGATTTCGAGAAAACGgtaagttcgc ... gttgttgcagTTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
EST: gi|163921384|gb|EH038948.1|EH038948
EST:     GGAATATCTCAAGTCATGATTTCGAGAAAACG                         TTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
genomic: GGAATATCTCAAGTCATGATTTCGAGAAAACGgtaagttcgc ... gttgttgcagTTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
EST: gi|208257813|gb|GE055352.1|GE055352
EST:     GGAATACCTCAAGTCATGATTTCGAGAAAACG                         TTGAAGAAGATGTGCAAAGAAGG
genomic: GGAATATCTCAAGTCATGATTTCGAGAAAACGgtaagttcgc ... gttgttgcagTTGAAGAAGATGTGCAAAGAAGG