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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGGGGGGATTTTTCAATGCCATTATGAGCTTTCCACCCAACTACCCAAATAGTCCACCATCAGTGAAATTTACCTCAGAGTTATGGCATCCCAATGgttggtctgacacattttttttatcctgcttcgattaatacatgaaattcaatgatgttgttcaatttgcag

Basic information

species Glycine max
transcript GLYMA13G40990.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G40990.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0004g04430.t01 (Vitis vinifera), 5'ss of exon 3
TGAGGGGGGATTTTTCAATGCCATTATGAGCTTTCCACCCAACTACCCAAATAGTCCACCATCAGTGAAATTTACCTCAGAGTTATGGCATCCCAATGgttggt-------ctgac-acattttttttatc-----ctgcttcgattaatacatga----aattcaat---gatgttgttcaatttgcag
||| |||||||||||||||||||| ||||||||||||||||| || || || ||||| ||| ||||||| ||||| |||||  | |||||||||||||||||||       |  ||  ||| | ||| ||      ||  | | |||    ||||     || ||||    | | |||    | || |||
TGATGGGGGATTTTTCAATGCCATCATGAGCTTTCCACCCAATTATCCGAACAGTCCTCCAACAGTGAAGTTTACTTCAGAAGTGTGGCATCCCAATGgttggttgtttgtccaactgcatgtgtttgatttttgactcttaccattggagcatggcttgaaatcaacttggttcttgcatgaattacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6667725|gb|AW279176.1|AW279176
EST:     AAATAGTCCACCATCAGTGAAATTTACCTCAGAGTTATGGCATCCCAATG                         TGTATCCTGATGGGCGAGTTTGCATATCAATTCTTCATCCTCCTGGTGACG
genomic: AAATAGTCCACCATCAGTGAAATTTACCTCAGAGTTATGGCATCCCAATGgttggtctga ... caatttgcagTGTATCCTGATGGGCGAGTTTGCATATCAATTCTTCATCCTCCTGGTGACG
EST: gi|6725322|gb|AW309721.1|AW309721
EST:     AAATAGTCCACCATCAGTGAAATTTACCTCAGAGTTATGGCATCCCAATG                         TGTATCCTGATGGGCGAGTTTGCATATCAATTCTTCATCCTCCTGGTGACG
genomic: AAATAGTCCACCATCAGTGAAATTTACCTCAGAGTTATGGCATCCCAATGgttggtctga ... caatttgcagTGTATCCTGATGGGCGAGTTTGCATATCAATTCTTCATCCTCCTGGTGACG
EST: gi|15287377|gb|BI471268.1|BI471268
EST:     AAATAGTCCACCATCAGTGAAATTTACCTCAGAGTTATGGCATCCCAATG                         TGTATCCTGATGGGCGAGTTTGCATATCAATTCTTCATCCTCCTGGTGACG
genomic: AAATAGTCCACCATCAGTGAAATTTACCTCAGAGTTATGGCATCCCAATGgttggtctga ... caatttgcagTGTATCCTGATGGGCGAGTTTGCATATCAATTCTTCATCCTCCTGGTGACG