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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACCAGAAAGAAGGTCTTGATTTTGGGTGGAGGACCAAATAGAATTGGTCAAGGGATTGAGTTTGACTACTGTTGTTGTCATGCATCCTTTGCTCTTCAGgtttgttttcttctcttttgtaataattggattaaatttcagattttttcgctgtgaaattttttaactggggttcaaatggtgctgctgatgctgtatg...

Basic information

species Glycine max
transcript GLYMA13G40380.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G40380.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G700683_T01 (Zea mays), 5'ss of exon 2
TACCAGAAAGAAGGTCTTGATTTTGGGTGGAGGACCAAATAGAATTGGTCAAGGGATTGAGTTTGACTACTGTTGTTGTCATGCATCCTTTGCTCTTC---AGgtttgttttcttctcttttgtaata----attggattaaatttcagattttttcgctgt--gaaatttttta----actg-gggttcaaatggt--gctgc-tgatgctgtatg---------------------------------
    || ||||||||  |||| |||||||| || |||||| | || || || || ||||||||||| ||||||||||| |||||||| ||||| ||||   |||||||||||    || ||| |   |    |||  | ||  |||    ||||| | | ||      || |||     | || | |||    | ||   |||| |  |   |||||                                 
---TAGGAAGAAGGTGCTGATATTGGGTGGTGGGCCAAATCGCATAGGCCAGGGCATTGAGTTTGATTACTGTTGTTGCCATGCATCATTTGCACTTCGAGAGgtttgtttttgcatcatttatttcatcttattccagtattttttttctttttcctcagttctgggttgtttgtgacattgtgagttttcttagtcaactgcattctatcgtatgaccttatataaatgttttcatatctatttacag

upper sequence: GLYMA13G40380.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G061990_T01 (Zea mays), 5'ss of exon 2
TACCAGAAAGAAGGTCTTGATTTTGGGTGGAGGACCAAATAGAATTGGTCAAGGGATTGAGTTTGACTACTGTTGTTGTCATGCATCCTTTGCTCTTC---AGgtttgttttctt------------------ctctttt-gtaataattggattaaatttcagattttttc------gctgtgaaattttttaactggg---gttcaa----atggtgctgc-tgatgctgtatg------------------------------------------
    |  ||||||||  |||| |||||||| || |||||| | || || || || ||||||||||| ||||| ||||| |||||||| ||||| ||||   ||||||||||| ||                  || |||  |||||  ||    | | ||  ||||| |||         |||||| ||| |||          |||||    ||||  |||  |  | |||||||                                          
---TAAGAAGAAGGTGCTGATATTGGGTGGTGGGCCAAATCGCATAGGCCAGGGCATTGAGTTTGATTACTGCTGTTGCCATGCATCATTTGCACTTCGAGAGgtttgtttttttgcatcatttattcccatcctgtttcagtaatctttttcctcagttctagattgtttgtgagaaattgtgaattttcttagtcaaatgcattcaattgtatggccctgtatttttctgtatggctgttttggcactaatgttttgctcttttatctctttatag

upper sequence: GLYMA13G40380.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G29900.1 (Arabidopsis thaliana), 5'ss of exon 2
TACCAGAAAGAAGGTCTTGATTTTGGGTGGAGGACCAAATAGAATTGGTCAAGGGATTGAGTTTGACTACTGTTGTTGTCATGCATCCTTTGCTCTTCAGgtttgttttcttctcttttgtaataattggattaaatttcagattttttcgctgtgaaattttttaactggggttcaaatggtgctgctgatgctgtatg-----
 | ||  |||||||| ||||||||||||||||| |||||  | ||||||||||||||||| ||||| ||||||||||| ||  |||| || ||  | ||||| ||| ||       | |  |     |     |||   |||      | | |   |  |||||   ||    ||       | ||  |  |  | |||      
CAACAAGAAGAAGGTTTTGATTTTGGGTGGAGGGCCAAACCGCATTGGTCAAGGGATTGAATTTGATTACTGTTGTTGCCACACATCTTTCGCCTTACAGgtatgtctttagacaatcta-agcgtctctcccaaaagccagtaaacattgtttcaacttttttatgctaaacttacttatctactttttttaatttatttgcag

upper sequence: GLYMA13G40380.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0004g03360.t01 (Vitis vinifera), 5'ss of exon 2
TACCAGAAAGAAGGTCTTGATTTTGGGTGGAGGACCAAATAGAATTGGTCAAGGGATTGAGTTTGACTACTGTTGTTGTCATGCATCCTTTGCTCTTCAGgtttgttttcttctcttttgtaataattggattaaatttcagattttttcgctgtgaaattttttaactggggttcaaatggtgctgctgatgctgtatg
|   || |||||||| || ||||| ||||||||||||||  | ||||||||||| ||||||||||||||||| || |||||| ||||||||||||| ||||| ||||||  |     |  |  ||      |||  ||      ||  |     |     | |  |  ||    |      |||   |||   |  |   
TCAAAGGAAGAAGGTTTTAATTTTAGGTGGAGGACCAAACCGGATTGGTCAAGGTATTGAGTTTGACTACTGCTGCTGTCATACATCCTTTGCTCTCCAGgtatgttttgcttctgctgtttgtaggctatttatgttctcttcttcctatggtttttggtctccacatgcctcttgttatgtgaacctgggtccattga