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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACACACAACCTCGATTTCAGTTTATTGTGATGAACCGTCGCAATACTGgttagtgactccgtctgcttgtgtttttttttttggttgttttgtcgtttataaaagtgggaaaattttgctggttattggaaactgggcgtaacgtgca...

Basic information

species Glycine max
transcript GLYMA13G39120.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G39120.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G08370.1 (Arabidopsis thaliana), 5'ss of exon 3
GAACACACAACCTCGATTTCAGTTTATTGTGATGAACCGTCGCAATACTGgttagtgactccgtctgcttgtgtttttttttttggt-tgttttgtcgtt-tataaaagtgggaaaattttgctggttattg-----gaaactgggcgtaacgtgca-----------------------------
 |  |||||||||||||||||||||||||||||||| ||||| ||||| ||| || || |   ||   |   |||  | | | |  | ||| | |      | || |  | | || || ||||  ||| ||      | |    |   ||     ||                             
AAGTACACAACCTCGATTTCAGTTTATTGTGATGAATCGTCGTAATACAGgtcag-gatttattcaaataaagttggtgtgtgtcatgtgtctagaaaaggtttagatttagtaatatattgcaagttcttatttaaggattcagtattagtaatcatcagtgtgttgctgtatttgtctggatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213595694|gb|DB962466.1|DB962466
EST:     GAACACACAACCTCGATTTCAGTTTATTGTGATGAACCGTCGCAATACTG                         AAAATTTGGTGGAGAATCTCTTGGGCGATTTTGAGTATGAAGTTCAGATTC
genomic: GAACACACAACCTCGATTTCAGTTTATTGTGATGAACCGTCGCAATACTGgttagtgact ... gcataagcagAAAATTTGGTGGAGAATCTCTTGGGCGATTTTGAGTATGAAGTTCAGATTC
EST: gi|213593287|gb|DB969917.1|DB969917
EST:     GAACACACAACCTCGATTTCAGTTTATTGTGATGAACCGTCGCAATACTG                         AAAATTTGGTGGAGAATCTCTTGGGCGATTTTGAGTATGAAGTTCAGATTC
genomic: GAACACACAACCTCGATTTCAGTTTATTGTGATGAACCGTCGCAATACTGgttagtgact ... gcataagcagAAAATTTGGTGGAGAATCTCTTGGGCGATTTTGAGTATGAAGTTCAGATTC
EST: gi|209709701|gb|BW673969.1|BW673969
EST:     GAACACACAACCTCGATTTCAGTTTATTGTGATGAACCGTCGCAATACTG                         AAAATTTGGTGGAGAATCTCTTGGGCGATTTTGAGTATGAAGTTCAGATTC
genomic: GAACACACAACCTCGATTTCAGTTTATTGTGATGAACCGTCGCAATACTGgttagtgact ... gcataagcagAAAATTTGGTGGAGAATCTCTTGGGCGATTTTGAGTATGAAGTTCAGATTC
EST: gi|151408519|gb|EV278327.1|EV278327
EST:     GAACACACAACCTCGATTTCAGTTTATTGTGATGAACCGTCGCAATACTG                         AAAATTTGGTGGAGAATCTCTTGGGCGATTTTGAGTATGAAGTTCAGATTC
genomic: GAACACACAACCTCGATTTCAGTTTATTGTGATGAACCGTCGCAATACTGgttagtgact ... gcataagcagAAAATTTGGTGGAGAATCTCTTGGGCGATTTTGAGTATGAAGTTCAGATTC
EST: gi|9819945|gb|BE555458.1|BE555458
EST:     GAACACACAACCTCGATTTCAGTTTATTGTGATGAACCGTCGCAATACTG                         AAAATTTGGTGGAGAATCTCTTGGGCGATTTTGAGTATGAAGTTCAGATTC
genomic: GAACACACAACCTCGATTTCAGTTTATTGTGATGAACCGTCGCAATACTGgttagtgact ... gcataagcagAAAATTTGGTGGAGAATCTCTTGGGCGATTTTGAGTATGAAGTTCAGATTC