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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAATGGCGTTGGCAACAGGGAGCAAAGACTCAACCTCTGGTTCGACCCCACCAAGGACTTCCACACCTACTCCATCTTCTGGAACCAGCGCCAAGTTGTgtaagtccctcttaattaagcagtcattatcctaaacattatattactatattttactgtaagtaagtaaaagcaatgttagttgaacctggactctttc...

Basic information

species Glycine max
transcript GLYMA13G38040.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G38040.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv12s0134g00160.t01 (Vitis vinifera), 5'ss of exon 3
TGAATGGCGTTGGCAACAGGGAGCAAAGACTCAACCTCTGGTTCGACCCCACCAAGGACTTCCACACCTACTCCATCTTCTGGAACCAGCGCCAAGTTGTgtaagtccctcttaattaagcagtcattatcctaaa---cattatattactatatttta---ctgtaagtaagtaaaagcaatgttagttgaacctggactctttc
| ||||| || |||||||| || |||||| | ||||||||||||||||||||||||||||||||| ||||| |  || | ||||| |||||||||||||||||||  | |  |  ||   |   | ||   ||      || |   |    | |   |        |  |    ||||    |||   ||   | || |       
TCAATGGTGTGGGCAACAGAGAACAAAGATTGAACCTCTGGTTCGACCCCACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctttctcttttcccttccctttctctttctctcaatgagtcggaaaaggctgggttcacacctccagaaaaagggtgtgcttttggcatgtat------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254327782|gb|GR834747.1|GR834747
EST:     ACCAAGGACTTCCACA-CTACTCCATCTTCTGGAACCAGCGCCAAGTTGT                         TTTCCTGGTGGATGAGACGCCAATAAGGGTGCACACGAACCTGGAACACAA
genomic: ACCAAGGACTTCCACACCTACTCCATCTTCTGGAACCAGCGCCAAGTTGTgtaagtccct ... atgtaaacagTTTCCTGGTGGATGAGACGCCAATAAGGGTGCACACGAACCTGGAACACAA
EST: gi|31471935|gb|CD413963.1|CD413963
EST:     ACCAAGGACTTCCACACCTACTCCATCTTCTGGAACCAGCGCCAAGTTGT                         TTTCCTGGTGGATGAGACGCCAATAAGGGTGCACACGAACCTGGAACACAA
genomic: ACCAAGGACTTCCACACCTACTCCATCTTCTGGAACCAGCGCCAAGTTGTgtaagtccct ... atgtaaacagTTTCCTGGTGGATGAGACGCCAATAAGGGTGCACACGAACCTGGAACACAA
EST: gi|5605947|gb|AI900045.1|AI900045
EST:     CCAAGGACTAT-CACACCTACTCCATCTTCTGGAACCAGCGCCAAGTTGT                         TTTCCTGGTGGATGAGACGCCAATAAGGGCGCACACGAACCTGGAACACAA
genomic: CCAAGGACT-TCCACACCTACTCCATCTTCTGGAACCAGCGCCAAGTTGTgtaagtccct ... atgtaaacagTTTCCTGGTGGATGAGACGCCAATAAGGGTGCACACGAACCTGGAACACAA
EST: gi|192297480|gb|FG989515.1|FG989515
EST:     ACCAAGGACTTCCACACCTACTCCATCTTCTGGAACCAGCGCCAAGTTGT                         TTTCCTGGTGGATGAGACGCCAATAAGGGTGCACACGAACCTGGAACACAA
genomic: ACCAAGGACTTCCACACCTACTCCATCTTCTGGAACCAGCGCCAAGTTGTgtaagtccct ... atgtaaacagTTTCCTGGTGGATGAGACGCCAATAAGGGTGCACACGAACCTGGAACACAA
EST: gi|31310278|gb|CD395481.1|CD395481
EST:     ACCAAGGACTTCCACACCTACTCCATCTTCTGGAACCAGCGCCAAGTTGT                         TTTCCTGGTGGATGAGACGCCAATAAGGGTGCACACGAACCTGGAACACAA
genomic: ACCAAGGACTTCCACACCTACTCCATCTTCTGGAACCAGCGCCAAGTTGTgtaagtccct ... atgtaaacagTTTCCTGGTGGATGAGACGCCAATAAGGGTGCACACGAACCTGGAACACAA
EST: gi|31463976|gb|CD406004.1|CD406004
EST:     ACCAAGGACTTCCACACCTACTCCATCTTCTGGAACCAGCGCCAAGTTGT                         TTTCCTGGTGGATGAGACGCCAATAAGGGTGCACACGAACCTGGAACACAA
genomic: ACCAAGGACTTCCACACCTACTCCATCTTCTGGAACCAGCGCCAAGTTGTgtaagtccct ... atgtaaacagTTTCCTGGTGGATGAGACGCCAATAAGGGTGCACACGAACCTGGAACACAA
EST: gi|31475931|gb|CD417959.1|CD417959
EST:     CTCCATCTTCTGGAACCAGCGCCAAGTTGT                         TTTCCTGTTGGATGAGACGCCAATAAGGGTGCACACGAACCTGGAACACAA
genomic: CTCCATCTTCTGGAACCAGCGCCAAGTTGTgtaagtccct ... atgtaaacagTTTCCTGGTGGATGAGACGCCAATAAGGGTGCACACGAACCTGGAACACAA