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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGGAGCAGCTTGGAGTGGATAAGGCTGTGCCTTCTAGGATTTTGGAGATTATGGGAATTGACTGCCTCACCCGCCATAACATTGCAAGCCACCTTCAAgtagatatattcttcaactttgaccccttacctagcttgtttgattttcaatccttctataaatttcatgccccaaaactcaatattaagagtcaaccta...

Basic information

species Glycine max
transcript GLYMA13G37010.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G37010.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv12s0028g03100.t01 (Vitis vinifera), 5'ss of exon 2
AGTGGAGCAGCTTGGAGTGGATAAGGCTGTGCCTTCTAGGATTTTGGAGATTATGGGAATTGACTGCCTCACCCGCCATAACATTGCAAGCCACCTTCAAgtagatatattcttcaactttgaccccttacctagcttgtttgattttcaat-ccttctataaatttcatgccccaaaactcaatattaagagtcaaccta
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AGTGGAGCAGCTAGGTGTGGATAAAGCAGTGCCTTCAAGGATTTTAGAGATTATGGGAATCGATTGTCTCACTCGCCACAACATTGCTAGCCACCTTCAAgtatgaaatcacatctcttcctaattctaccattcctgttattctgtacaaagtcatggatttgtttggtttctgtagaatttttgttgccagtagatct-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16105783|gb|BI893523.1|BI893523
EST:     ATTGCAAGCCACCTTCAA                         AAATATAGATCGCACAGGAAGCATTTGCTAGCGCGTGAAGCTGAAGCAGCA
genomic: ATTGCAAGCCACCTTCAAgtagatatat ... tgtgtggcagAAATATAGATCGCACAGGAAGCATTTGCTAGCGCGTGAAGCTGAAGCAGCA