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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatccttttcttatcgatattttaattagcttaattcaggcatgaagaaatgatttgggagtgtgaataatgagaattgatttgactgtagttaaactt...

Basic information

species Glycine max
transcript GLYMA13G35590.1
intron # 3
splice site 5'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G35590.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G090738_T01 (Zea mays), 5'ss of exon 3
AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctt-----ttcttat----cgatattttaattagctt-aattcaggcatgaagaaa-tgatttgggagtgtgaa-taatgagaattgatttgactgtagttaaactt---------------------------------------------------------------
  || || || || ||| | || |||||  |||||||||| || ||||||||||| || || || || |||||||||||| | || || |||||||||||     || ||||     ||  | ||  |  | || || ||  || |     || |   |||||| |   |    |||   ||    ||| || | | | | | |                                                               
CTGGTAAGACAGACTACAGGGCAAGGATAAGGTTGATTAACCAAGACAAGAACAAGTACAATACACCCAAATACCGATTTATTGTGCGATTTgtatccttcaaatttattatttggtgacttcttgttgggtttcaactctagcctaccccaacttgcttgggactaaaaggctatgttgatgttgttgtcttttgatcatcctcctgcttattattttggcactttaagcattggcggcattgtatctcttaataaatctccttag

upper sequence: GLYMA13G35590.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G163081_T04 (Zea mays), 5'ss of exon 3
AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatccttttcttatc-gatattttaattagcttaattcaggcatgaagaaatga--tttgggagtgtgaataatgagaattgatttgactgtagttaaactt
  || || || || ||| | ||||||||  || ||||||| || ||||| ||||| || ||||| || |||||| ||||||| || || ||||||||||||  ||||  ||   | |  ||  ||   |   |  |||      |||  |   | ||  |  ||  |     || | | || | |  |||     
CTGGCAAGACAGACTACAGGGCCAGGATAAGGCTGATTAACCAAGACAAAAACAAGTACAACACACCCAAATACAGATTTGTTGTGCGATTTgtatcctttgattatttgaccatctggttt-ctacctattgctatggtactttgagctccagaagcatatattgtatctcttaactaga-tattcttag----

upper sequence: GLYMA13G35590.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv00s0174g00190.t01 (Vitis vinifera), 5'ss of exon 4
AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatccttttcttatcgatattttaattagcttaattcaggcatgaagaaatgatttgggagtgtgaataatgagaattgatttgactgtagttaa--actt---
 ||| || || || || ||||||||||||||  |||| ||||| |||||||| || || |||||||| ||||| |||||||| || || ||||||||||  | | |    |  ||  | |   || || |  |  | |     ||        || ||  |||| |  || |     || | | || |  ||||   
CGGGCAAGACAGACTATCGTGCCAGGATTCGCCTGATCAATCAAGACAAGAATAAGTACAACACTCCAAAATATCGATTTGTCGTGCGATTTgtatcctaatatcaagtttgattctact--ttttatgcgtgtgt-actggttggccctctggtatg--taattaagatgggagacacagaaatttattacttaaa

upper sequence: GLYMA13G35590.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv05s0094g00870.t01 (Vitis vinifera), 5'ss of exon 3
AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatccttttcttatcgatattttaattagcttaattcaggcatgaagaaatgatttgggagtgtgaataatgagaattgatttgactgtagttaaactt-------
||||||| || || ||| | || ||||||||  |||||||||| ||||||||||| ||||||||||||||||| || ||||| || || |||||||||||   ||||  ||| |   |||  | ||||||     |   ||  |    | |  || | |||||      |||    | ||   || || ||        
AGGGAAAGACTGACTACAGGGCTAGGATTCGCCTGATTAATCAAGACAAGAACAAGTATAACACTCCGAAATATCGCTTTGTTGTGCGATTTgtatccttaatttatt-ataataatatttccataattc-----ttctgatttccccttgtggt-tcaataagctaggttgtcgaggcttctgtcaacctcttttgtt

upper sequence: GLYMA13G35590.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S364_3V6.1 (Physcomitrella patens), 5'ss of exon 3
AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatccttttcttatcgatattttaattagcttaattcaggcatgaagaaatgatttg--ggagtgtgaataatgagaattgatttgactgtagtta-aactt--
  || |||||||||||||| || ||||| || ||||  | ||||||||||||||| || ||||| ||||| ||||| || || ||||| || |||||||| |    || | ||||||   ||   ||  |        |||| | |   |  | ||| | | |  |   | ||   |||   |  || | |||||  
CTGGTAAAACCGATTACCGGGCGAGGATCCGTTTGACCACTCAGGACAAGAACAAGTACAACACCCCGAAGTACCGTTTCGTCGTTCGTTTCgtatccttctgac-tctacattttag--agtgcaacgctactggacagaagttaaaagatgtagtttcactcttttaattt--cttgttgggggtgacaacttca

upper sequence: GLYMA13G35590.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S97_115V6.1 (Physcomitrella patens), 5'ss of exon 3
AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatccttttct-tatcgatattttaattagcttaattcaggca-tgaagaaatgatttgggagtgtgaataatgagaattgatttgactgtagttaaactt
  ||||| ||||| ||||| || ||||||||  |||  |  ||||||||||||||||| ||||| ||||| ||||| || || || || ||||||||||||| | | | | | |  | || ||  |  ||  |  | |      |  ||||| |||    |  |  | |  ||  ||  |  |||  |   |  
CTGGAAAGACCGACTACCGAGCTAGGATTCGCCTGACCACCCAGGACAAGAACAAATACAACACCCCGAAGTACCGTTTGGTCGTGCGATTTgtatccttttatgtgttgctttgatcatgaggatctttttgcaagtcgttccaacatttgagagaactatgacggtggcttttttgaagcgtatctgttc--

upper sequence: GLYMA13G35590.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S38_329V6.2 (Physcomitrella patens), 5'ss of exon 3
AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatccttttcttatcgatattttaattagcttaat--tcaggcatgaagaaatgatttgggagtgtgaataatgagaatt-gatttgactgtagttaaactt
  || ||||||||||||||||| |||||||| |||| ||  ||||| |||||||| || ||||| ||||| ||||| | ||| || || |||||||||||| | ||     ||| |   | || | ||  || ||  | |   |  | | ||   |  |      |  | ||| |  ||   ||| | | | || 
CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTTgtatccttt-catactacaattctggct-gcgtgatggtctgggtttagtgatggctgtgcccgcctcgtcgttttggattagggttcggtgt-gctgaccta

upper sequence: GLYMA13G35590.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ31187 (Selaginella moellendorffii), 5'ss of exon 3
AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatccttt-tcttatcgatattttaattagcttaattcaggcatgaagaaatgatttgggagtgtgaataatgagaattgatttgactgtagttaaactt
|||| || |||||||| || ||  || | || ||||  |||||||||||||||||||| ||||| ||||| |||||||| || ||||||||||||   | | |||  |  ||  |||    | ||  |   | || |       |  ||| | | | ||  | |                             
AGGGCAAGACCGATTATCGGGCTCGGGTGCGCTTGACGAATCAGGACAAGAACAAATACAACACACCGAAGTACCGATTCGTCGTTCGCTTTgtaagttctgtctcctttatcatttggaaaactgga--aaagcttacgttttttgttttg-attttgtgttag----------------------------

upper sequence: GLYMA13G35590.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ17161 (Selaginella moellendorffii), 5'ss of exon 3
AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatccttt-tcttatcgatattttaattagcttaattcaggcatgaagaaatgatttgggagtgtgaataatgagaattgatttgactgtagttaaactt
|||| || |||||||| || ||  || | || ||||  |||||||||||||||||||| ||||| ||||| |||||||| || ||||||||||||   | | |||  |  ||  |||    | ||  |   | || |       |  ||| | | | ||  | |                             
AGGGCAAGACCGATTATCGGGCTCGGGTGCGCTTGACGAATCAGGACAAGAACAAATACAACACACCGAAGTACCGATTCGTCGTTCGCTTTgtaagttctatctcctttatcctttggaaaactgga--aaagcttacgttttttgttttg-attttgtgttag----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298179265|gb|HO027736.1|HO027736
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|13181447|gb|BG352787.1|BG352787
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|298175002|gb|HO017997.1|HO017997
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACGTTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|26058921|gb|CA801835.1|CA801835
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGTTAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|42722709|gb|CK768608.1|CK768608
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|37993992|gb|CF805738.1|CF805738
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|298185668|gb|HO030881.1|HO030881
EST:     AGGACAAGAACAAAGATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|209721139|gb|BW665696.1|BW665696
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|213588681|gb|DB957689.1|DB957689
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|213593969|gb|DB961913.1|DB961913
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|15203735|gb|BI426503.1|BI426503
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGCTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|37993873|gb|CF805619.1|CF805619
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|19452678|gb|BM954088.1|BM954088
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|6502066|gb|AW203439.1|AW203439
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGA
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGG-ACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGA
EST: gi|213611688|gb|DB969076.1|DB969076
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|17153260|gb|BM143193.1|BM143193
EST:     TTGTGGTTCGCTTT                         AGCAACAAGGACATTGTAT-CACAAATAATATCTGCTAGCATTGCCGGCGA
genomic: TTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGT-TGCACAAATAATATCTGCTAGCATTGCCGGCGA
EST: gi|7326863|gb|AW620661.1|AW620661
EST:     CAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: CAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|15812318|gb|BI784593.1|BI784593
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|8282845|gb|BE020406.1|BE020406
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|192305243|gb|FG993981.1|FG993981
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|209711827|gb|BW674087.1|BW674087
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|213608827|gb|DB957191.1|DB957191
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|23727797|gb|BU761934.1|BU761934
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACTTATTAATATCTGCTAGCATTGCCGGCGA
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCAC-AAATAATATCTGCTAGCATTGCCGGCGA
EST: gi|18733428|gb|BM527602.1|BM527602
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|254328305|gb|GR835270.1|GR835270
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|298195414|gb|HO039245.1|HO039245
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|6072796|gb|AW102183.1|AW102183
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|254332683|gb|GR844053.1|GR844053
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|163921337|gb|EH039759.1|EH039759
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|298177039|gb|HO023400.1|HO023400
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|19269197|gb|BM885453.1|BM885453
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|213619435|gb|DB963401.1|DB963401
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|46492910|gb|CN472466.1|CN472466
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|8284697|gb|BE022239.1|BE022239
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|23731241|gb|BU763733.1|BU763733
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|13562903|gb|BG551123.1|BG551123
EST:     GGACAAGAACAATTATAACACGTCCGAAATACCGTTTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCCGCGAT
genomic: GGACAAGAACAAATATAACAC-TCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|14125882|gb|BG790320.1|BG790320
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|192318939|gb|FK006835.1|FK006835
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCCTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|38192978|gb|CF922184.1|CF922184
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|11412751|gb|BF424762.1|BF424762
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|213607717|gb|DB958736.1|DB958736
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|209710634|gb|BW671006.1|BW671006
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|7326861|gb|AW620659.1|AW620659
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|18692881|gb|BM521729.1|BM521729
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|9440322|gb|BE440829.1|BE440829
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|192316655|gb|FK006834.1|FK006834
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGT-CGCCTT                         AGCAACAAGGACATTGTTGCACAA-TAATATCT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCT
EST: gi|254316214|gb|GR827751.1|GR827751
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|298183188|gb|HO028451.1|HO028451
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|17022274|gb|BM093308.1|BM093308
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|18040880|gb|BM309174.1|BM309174
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|12773942|gb|BG238869.1|BG238869
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|213614228|gb|DB956812.1|DB956812
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|24205594|gb|BU964847.1|BU964847
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|213619814|gb|DB969478.1|DB969478
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|18041137|gb|BM309431.1|BM309431
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|209716540|gb|BW653902.1|BW653902
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|298183179|gb|HO028442.1|HO028442
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|213601355|gb|DB956675.1|DB956675
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|298183338|gb|HO028551.1|HO028551
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|254320081|gb|GR830997.1|GR830997
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|209710047|gb|BW681039.1|BW681039
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|254319372|gb|GR828992.1|GR828992
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|6070850|gb|AW100237.1|AW100237
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|298185362|gb|HO030575.1|HO030575
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTAT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|213617258|gb|DB972896.1|DB972896
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|7590322|gb|AW706077.1|AW706077
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
EST: gi|26267787|gb|CA818850.1|CA818850
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... tggttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatccttttcttatcgatattttaattagcttaattcaggcatgaagaaatgatttgggagtgtgaataatgagaattgatttgactgtagttaaactt

- - - - - - - - - - - - - - - - - - - - - - -  AAGAAC