1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTTCTCGTGGTAGCTCTTTCGAGAAAGTATGGAAAACGACTTGCTACGTATGCCCTTGCTATGCTGTGCTTAACCAGTGGCTGTTTCTTTGCTAGCACTAgtaagtgatcctttggctttttattttttcaaaatgatttcttatcttcatcttctcttgtcattatgcatacctacctttgaaaataaataaagggtgaccaagtattatgtgtttcatgattctgtattccagtctaagatatgggactctgttttactaatgttctttttcaaacttttattatctctag
species | Glycine max |
transcript | GLYMA13G34570.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGCCCTTGCTATGCTGTGCTTAACCAGTGGCTGTTTCTTTGCTAGCACTA GTTTCTTGCCGAGTTCGTTTTCTATGTATGCAATATCTCTTGCATCAGGTTEST: gi|193614860|gb|FK561078.1|FK561078
genomic: TGCCCTTGCTATGCTGTGCTTAACCAGTGGCTGTTTCTTTGCTAGCACTAgtaagtgatc ... ttatctctagGTTTCTTGCCGAGTTCGTTTTCTATGTATGCAATATCTCTTGCATCAGGTT
EST: TGCCCTTGCTATGCTGTGCTTAACCAGTGGCTGTTTCTTTGCTAGCACTA GTTTCTTGCCGAGTTCGTTTTCTATGTATGCAATATCTCTEST: gi|298178623|gb|HO024358.1|HO024358
genomic: TGCCCTTGCTATGCTGTGCTTAACCAGTGGCTGTTTCTTTGCTAGCACTAgtaagtgatc ... ttatctctagGTTTCTTGCCGAGTTCGTTTTCTATGTATGCAATATCTCT
EST: GCCCTTGCTATGCTGTGCTTAACCAGTGGCTGGTTTCTTTGCTAGCACTA GTTTCTTGCCGAGTTCGTTTTCTATGTATGCAATATCTCTTGCATCAGGTTEST: gi|208083593|gb|GD880995.1|GD880995
genomic: GCCCTTGCTATGCTGTGCTTAACCAGTGGCT-GTTTCTTTGCTAGCACTAgtaagtgatc ... ttatctctagGTTTCTTGCCGAGTTCGTTTTCTATGTATGCAATATCTCTTGCATCAGGTT
EST: TGGCTGTTTCTTTGCTAGCACTA GTTTCTTGCCGAGTTCGTTTTCTATGTATGCAATATCTCTTGCATCAGGTTEST: gi|193313985|gb|FK282460.1|FK282460
genomic: TGGCTGTTTCTTTGCTAGCACTAgtaagtgatc ... ttatctctagGTTTCTTGCCGAGTTCGTTTTCTATGTATGCAATATCTCTTGCATCAGGTT
EST: TGCCCTTGCTATGCTGTGCTTAACCAGTGGCTGTTTCTTTGCTAGCACTA GTTTCTTGCCG
genomic: TGCCCTTGCTATGCTGTGCTTAACCAGTGGCTGTTTCTTTGCTAGCACTAgtaagtgatc ... ttatctctagGTTTCTTGCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCTCGTGGTAGCTCTTTCGAGAAAGTATGGAAAACGACTTGCTACGTATGCCCTTGCTATGCTGTGCTTAACCAGTGGCTGTTTCTTTGCTAGCACTAgtaagtgatcctttggctttttattttttcaaaatgatttcttatcttcatcttctcttgtcattatgcatacctacctttgaaaataaataaagggtgaccaagtattatgtgtttcatgattctgtattccagtctaagatatgggactctgttttactaatgttctttttcaaacttttattatctctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT