1 5' 3' | 2 5' 3' | 3 5' 3' |
CAGCTAGGAGATATAGGTGTGGTACTCATACCGAGTATATAATTTCACTTGATGCTGATGATTTATCCCAAGGAAGCAATGCTTATGTTGGAAAGCTAAGgtaaagctttcttgccataaaaatagaagaaaaaaaatctgtttattatggtgaggtatagacattttttttttggtgaaacatgaggtatagacatcta...
species | Glycine max |
transcript | GLYMA13G34470.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GATGCTGATGATTTATCCCAAGGAAGCAATGCTTATGTTGGAAAGCTAAG CTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCAEST: gi|14125194|gb|BG789632.1|BG789632
genomic: GATGCTGATGATTTATCCCAAGGAAGCAATGCTTATGTTGGAAAGCTAAGgtaaagcttt ... atctccacagCTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCA
EST: GATGCTGATGATTTATCCCAAGGAAGCAATGCTTATGTTGGAAAGCTAAG CTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCAEST: gi|9898625|gb|BE607593.1|BE607593
genomic: GATGCTGATGATTTATCCCAAGGAAGCAATGCTTATGTTGGAAAGCTAAGgtaaagcttt ... atctccacagCTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCA
EST: GATGCTGATGATTTATCCCAAGGAAGCAATGCTTATGTTGGAAAGCTAAG CTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCAEST: gi|19271158|gb|BM887414.1|BM887414
genomic: GATGCTGATGATTTATCCCAAGGAAGCAATGCTTATGTTGGAAAGCTAAGgtaaagcttt ... atctccacagCTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCA
EST: GATGCTGATGATTTATCCCAAGGAAGCAATGCTTATGTTGGAAAGCTAAG CTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCA
genomic: GATGCTGATGATTTATCCCAAGGAAGCAATGCTTATGTTGGAAAGCTAAGgtaaagcttt ... atctccacagCTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGCTAGGAGATATAGGTGTGGTACTCATACCGAGTATATAATTTCACTTGATGCTGATGATTTATCCCAAGGAAGCAATGCTTATGTTGGAAAGCTAAGgtaaagctttcttgccataaaaatagaagaaaaaaaatctgtttattatggtgaggtatagacattttttttttggtgaaacatgaggtatagacatcta
- - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgagg