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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGTTTTGCGGGTATAATTGTGATATGTCTAGATGAGCTTCTTCAAAAAGGATATGGTCTGGGGTCTGGAATATCCCTATTCATTGCAACCAATATCTGgtaaatttctacttttccctgatgagatatttccagcttttaattataatgttcttgttgtcttctagcaactgctaaccaggatatttaaccatttatctaatacttaaatggaattcccttttcgtttttcag

Basic information

species Glycine max
transcript GLYMA13G34370.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G34370.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os09g17830.1 (Oryza sativa), 5'ss of exon 2
TATGTTTTGCGGGTATAATTGTGATATGTCTAGATGAGCTTCTTCAAAAAGGATATGGTCTGGGGTCTGGAATATCCCTATTCATTGCAACCAATATCTGgtaaatttctacttttccctgatgagatatttccagcttttaattataatgttcttgttgtcttctagcaactgctaaccaggatatttaaccatttatctaatacttaaatggaattcccttttcgtttttcag
| |  ||||| || || ||||| || || || ||||| ||||| || ||||| |||||| |||| ||||| || || || |||||||| |||||||||||||||   |||    || | | ||   | |||     |||     | | |  || |||||    | |||                                                                   
TTTTCTTTGCTGGCATCATTGTTATCTGCCTTGATGAACTTCTCCAGAAAGGCTATGGTTTGGGTTCTGGCATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatcttaaatttctttatcttacatt-----cttactgatgtgacatt-ttgttacaatttag-------------------------------------------------------------------

upper sequence: GLYMA13G34370.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os03g11440.1 (Oryza sativa), 5'ss of exon 3
TATGTTTTGCGGGTATAATTGTGATATGTCTAGATGAGCTTCTTCAAAAAGGATATGGTCTGGGGTCTGGAATATCCCTATTCATTGCAACCAATATCTGgtaaatttctacttttccctgatgagatatttccagcttttaattataatgttcttgttgtcttctagcaactgctaaccaggatatttaaccatttatctaatacttaaatggaattcccttttcgtttttcag
| |  ||||| || || ||||| || ||||| ||||| ||||| || ||||| |||||| |||| ||||| || || || || ||||| ||||||||||||| |      | |   |  || |      | || |   || |  | |  | |||   ||| ||| | | ||    |  |                                                        
TTTTCTTTGCTGGCATCATTGTCATCTGTCTGGATGAACTTCTCCAGAAAGGTTATGGTTTGGGTTCTGGCATTTCTCTCTTTATTGCTACCAATATCTGgtgagcac--attgaactttgtt----cttctctattgttgacattttctattcaacttgacttatggaaatctttctctgtag---------------------------------------------------

upper sequence: GLYMA13G34370.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G307252_T02 (Zea mays), 5'ss of exon 2
TATGTTTTGCGGGTATAATTGTGATATGTCTAGATGAGCTTCTTCAAAAAGGATATGGTCTGGGGTCTGGAATATCCCTATTCATTGCAACCAATATCTGgtaaatttctacttttccctgatgagatatttccagcttttaattataatgttcttgttg--tcttctagcaactgctaaccaggatattt-aaccatttatctaatacttaaatggaattcccttttcgtttttcag
| |  ||||| ||||| ||||| || ||||||||||| || || || ||||| |||||| |||| ||||| || || || |||||||| || ||||||||||||   | |      ||    ||    | | ||     | | ||   |   | |   |   | ||||  | |  | ||   |    |||  ||| | | | ||                                  
TTTTCTTTGCTGGTATCATTGTCATCTGTCTAGATGAACTCCTACAGAAAGGCTATGGTTTGGGATCTGGTATCTCTCTGTTCATTGCTACGAATATCTGgtaagcatattaagggcctgtttggttcactacc-----tcagttgccacactttgcctaacttttctgcctaaggttagttattcaattcgaactactaacctt---------------------------------

upper sequence: GLYMA13G34370.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G130987_T02 (Zea mays), 5'ss of exon 3
TATGTTTTGCGGGTATAATTGTGATATGTCTAGATGAGCTTCTTCAAAAAGGATATGGTCTGGGGTCTGGAATATCCCTATTCATTGCAACCAATATCTGgtaa--atttctacttt--tccctgatgagatatttccagcttttaattataatgttcttgttgtcttctagcaactgctaaccaggatatttaaccatttatctaatacttaaatggaattcccttttcgtttttcag
| |  ||||| || || ||||| || ||| | ||||| ||||| || ||||| |||||| |||| ||||| || || || |||||||| |||||||||||||||  || |    |||  ||| |     ||| ||   |     |   | ||||||||| |||  |   |||   ||  |||  ||  |  ||   ||| ||                                     
TTTTCTTTGCTGGCATCATTGTCATCTGTTTGGATGAACTTCTCCAGAAAGGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatgttggatttaatccttttattgatgttgatattagattgatgtaatgttct-gtt-ccacttagt--cttataataagactgctt--tcatgtag------------------------------------

upper sequence: GLYMA13G34370.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G073498_T02 (Zea mays), 5'ss of exon 2
TATGTTTTGCGGGTATAATTGTGATATGTCTAGATGAGCTTCTTCAAAAAGGATATGGTCTGGGGTCTGGAATATCCCTATTCATTGCAACCAATATCTGgtaaatttctacttttccctgatgagatatttccagcttttaattataatgttcttgttgtcttctagcaactgctaaccaggatatttaaccatttatctaatacttaaatggaattcccttttcgtttttcag
| |  ||||| || || ||||| || ||||| ||||| ||||| || ||||| |||||  |||| ||||| || || || |||||||| |||||||||||||||   |||            ||   |   |||   | || ||  |  |||||| ||||   |  |  | ||  |||  || ||  ||   ||| ||                                     
TTTTCTTTGCTGGCATCATTGTCATCTGTCTGGATGAACTTCTCCAGAAAGGTTATGGCTTGGGATCTGGCATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatct------------tggacttaatccttttattgat-gtgctgttct-gttgcacttaa--agcttataataagaattctt--tcatgtag------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192302459|gb|FG994795.1|FG994795
EST:     GGATATGGTCTGGGGTCTGGAATATCCCTATTCATTGCAACCAATATCTG                         TGAAAACATTATATGGAAGGCATTTAGTCCAACCACCATTAACAGTGGGCG
genomic: GGATATGGTCTGGGGTCTGGAATATCCCTATTCATTGCAACCAATATCTGgtaaatttct ... cgtttttcagTGAAAACATTATATGGAAGGCATTTAGTCCAACCACCATTAACAGTGGGCG
EST: gi|16349322|gb|BI974917.1|BI974917
EST:     GGATATGGTCTGGGGTCTGGAATATCCCTATTCATTGCAACCAATATCTG                         TGAAAACATTATATGGAAGGCATTTAGTCCAACCACCATTAACAGTGGGCG
genomic: GGATATGGTCTGGGGTCTGGAATATCCCTATTCATTGCAACCAATATCTGgtaaatttct ... cgtttttcagTGAAAACATTATATGGAAGGCATTTAGTCCAACCACCATTAACAGTGGGCG
EST: gi|209721281|gb|BW665775.1|BW665775
EST:     GGATATGGTCTGGGGTCTGGAATATCCCTATTCATTGCAACCAATATCTG                         TGAAAACATTATATG
genomic: GGATATGGTCTGGGGTCTGGAATATCCCTATTCATTGCAACCAATATCTGgtaaatttct ... cgtttttcagTGAAAACATTATATG
EST: gi|16348617|gb|BI974212.1|BI974212
EST:     GGATATGGTCTGGGGTCTGGAATATCCCTATTCATTGCAACCAATATCTG                         TGAAAACATTATATGGAAGGCATTTAGTCCAACCACCATTAACAGTGGGCG
genomic: GGATATGGTCTGGGGTCTGGAATATCCCTATTCATTGCAACCAATATCTGgtaaatttct ... cgtttttcagTGAAAACATTATATGGAAGGCATTTAGTCCAACCACCATTAACAGTGGGCG
EST: gi|7640034|gb|AW734344.1|AW734344
EST:     TGATATGGTCTGGGGTCTGGAATATCCCTATTCATTGCAACCAATATCTG                         TGAAAACATTATATGGAAGGCATATAGTGCATCCACCATTTACAGTGAGCG
genomic: GGATATGGTCTGGGGTCTGGAATATCCCTATTCATTGCAACCAATATCTGgtaaatttct ... cgtttttcagTGAAAACATTATATGGAAGGCATTTAGTCCAACCACCATTAACAGTGGGCG
EST: gi|298168692|gb|HO009622.1|HO009622
EST:     GGATATGGTCTGGGGTCTGGAATATCCCTATTCATTGCAACCAATATCTG                         TGAAAACATTATATGGAAGGCATTTAGTCCAACCACCATTAACAGTGGGCG
genomic: GGATATGGTCTGGGGTCTGGAATATCCCTATTCATTGCAACCAATATCTGgtaaatttct ... cgtttttcagTGAAAACATTATATGGAAGGCATTTAGTCCAACCACCATTAACAGTGGGCG
EST: gi|151396883|gb|EV266756.1|EV266756
EST:     GGATATGGTCTGGGGTCTGGAATATCCCTATTCATTGCAACCAATATCTG                         TGAAAACATTATATGGAAGGCATTTAGTCCAACCACCATCAACAGTGGACG
genomic: GGATATGGTCTGGGGTCTGGAATATCCCTATTCATTGCAACCAATATCTGgtaaatttct ... cgtttttcagTGAAAACATTATATGGAAGGCATTTAGTCCAACCACCATTAACAGTGGGCG
EST: gi|209699069|gb|BW652862.1|BW652862
EST:     GGATATGGTCTGGGGTCTGGAATATCCCTATTCATTGCAACCAATATCTG                         TGAAAACATTATATGGAAGGCATTTAGTCCAACCACCATTAACAGTGGGCG
genomic: GGATATGGTCTGGGGTCTGGAATATCCCTATTCATTGCAACCAATATCTGgtaaatttct ... cgtttttcagTGAAAACATTATATGGAAGGCATTTAGTCCAACCACCATTAACAGTGGGCG