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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTCGAAAGGTCTTGAATATGAGGCTGTTCCCAAATGAAAATACGGGCAAAGCGTGGGACCACAGTGTAATGCAGAAAAATTATCAAGTTTTGTTGGgtgagtaagtgagtattcgcattttcaatcttaattatatattggatgcaaaaattatagtttattttattattttgtgcttttatttaatag

Basic information

species Glycine max
transcript GLYMA13G30670.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G30670.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv10s0003g00640.t01 (Vitis vinifera), 5'ss of exon 4
ATGTCGAAAGGTCTTGAATATGAGGCTGTTCCCAAATGAAAATACGGGCAAAGCGTGGGACCACAGTGTAATGCAGAAAAATTATCAAGTTTTGTTGGgtgagtaagtgagtattcgcattttcaatcttaattatatattggatgcaaaaattatagtttattttattattttgtgcttttatttaatag
|||||| ||||| ||||| |||||| ||||||||||||| | ||| |||| ||| |||||||| || |||||         || |  |  ||  |    ||| |      || |||  |    | ||  | ||| | | | |     | |||||||   ||  || | | ||| |||  | | |  |    
ATGTCGGAAGGTGTTGAACATGAGGTTGTTCCCAAATGAGACTACTGGCAGAGCATGGGACCAAAGCgtaattttccc--tttctttatattcatcttctgaatt-----gttttc-taccacctattgttattgt-tgtcg-----agaaattatgaattcgttgaat-tttggtggatatgtgcag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298199178|gb|HO042541.1|HO042541
EST:     CAAAGCGTGGGACCACAGTGTAATGCAGAAAAATTATCAAGTTTTGTTGG                         TGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTC
genomic: CAAAGCGTGGGACCACAGTGTAATGCAGAAAAATTATCAAGTTTTGTTGGgtgagtaagt ... tatttaatagTGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTC
EST: gi|207754888|gb|GD727341.1|GD727341
EST:     CAAAGCGTGGGACCACAGTGTAATGCAGAAAAATTATCAAGTTTTGTTGG                         TGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTC
genomic: CAAAGCGTGGGACCACAGTGTAATGCAGAAAAATTATCAAGTTTTGTTGGgtgagtaagt ... tatttaatagTGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTC
EST: gi|13478787|gb|BG508130.1|BG508130
EST:     CAAAGCGTGGGACCACAGTGTAATGCAGAAAAATTATCAAGTTTTGTTGG                         TGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTC
genomic: CAAAGCGTGGGACCACAGTGTAATGCAGAAAAATTATCAAGTTTTGTTGGgtgagtaagt ... tatttaatagTGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTC
EST: gi|193465651|gb|FK433312.1|FK433312
EST:     CAAAGCGTGGGACCACAGTGTAATGCAGAAAAATTATCAAGTTTTGTTGG                         TGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTC
genomic: CAAAGCGTGGGACCACAGTGTAATGCAGAAAAATTATCAAGTTTTGTTGGgtgagtaagt ... tatttaatagTGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTC
EST: gi|298182728|gb|HO031463.1|HO031463
EST:     CAAAGCGTGGGACCACAGTGTAATGCAGAAAAATTATCAAGTTTTGTTGG                         TGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTC
genomic: CAAAGCGTGGGACCACAGTGTAATGCAGAAAAATTATCAAGTTTTGTTGGgtgagtaagt ... tatttaatagTGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTC
EST: gi|208305147|gb|GE102820.1|GE102820
EST:     CAAAGCGTGGGACCACAGTGTAATGCAGAAAAATTATCAAGTTTTGTTGG                         TGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTC
genomic: CAAAGCGTGGGACCACAGTGTAATGCAGAAAAATTATCAAGTTTTGTTGGgtgagtaagt ... tatttaatagTGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTC
EST: gi|298166730|gb|HO010169.1|HO010169
EST:     CAAAGCGTGGGACCACAGTGTAATGCAGAAAAATTATCAAGTTTTGTTGG                         TGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTC
genomic: CAAAGCGTGGGACCACAGTGTAATGCAGAAAAATTATCAAGTTTTGTTGGgtgagtaagt ... tatttaatagTGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTC