Sequence
atgc intronic sequence ATGC exonic sequenceTGGGGCCACTGAATATAGTGTAGGAGTGGACCTCTGGAGTGCTGGCTGCATTCTTGCTGAATTATTGGCTGGAAAGCCTATTATGCCTGGTCGAACAGAGgtaatctctatgatggatacactatatagggcttaatgtctatagttgcatcttttaagggcttaatgtgtattcagtttactagtctaaggtgcaaggttttgttgtcgatggcttctcaattttctgctacttgattgtgaaatttgtgcttcagattttactgctataattagcatcctttatgtgttatag
Basic information
species | Glycine max |
transcript | GLYMA13G28650.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G28650.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM5G873277_T01 (Zea mays), 5'ss of exon 3
TGGGGCCACTGAATATAGTGTAGGAGTGGACCTCTGGAGTGCTGGCTGCATTCTTGCTGAATTATTGGCTGGAAAGCCTATTATGCCTGGTCGAACAGAGgtaatctctatgatggatacactatatagggcttaatgtctatagttgcatct---tttaagggcttaatgtgtattcagtttactagtctaaggtgcaaggttttgttgtcgatggcttctcaattttctgctacttgattgtgaaatttgtgcttcagattttactgctataattagcatcctttatgtgttatag
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GGGTGCGACGGATTATGGAGTTGGCGTAGACTTGTGGAGTGCAGGATGTATACTGGCTGAATTGCTGGCTGGAAAGCCTATTATGCCTGGACGGACTGAGgttagctacagaatgcttgaccgttgcatcatattctccctgaaataccatctggctatcagcacttgccatttaag-gttctgtttaccaaggctgcgaa-------------------------------------------------------------------------------------------------
upper sequence: GLYMA13G28650.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G156251_T01 (Zea mays), 5'ss of exon 3
TGGGGCCACTGAATATAGTGTAGGAGTGGACCTCTGGAGTGCTGGCTGCATTCTTGCTGAATTATTGGCTGGAAAGCCTATTATGCCTGGTCGAACAGAGgt-aatctctatgatggatacactatatagggcttaatgtctatagttgcatcttttaagggcttaatgtgtattcagtttactagtctaaggtgcaaggttttgttgtcgatggcttctcaattttctgctacttgattgtgaaatttgtgcttcagattttactgctataattagcatcctttatgtgttatag
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TGGTGCCACTGAGTATAGTGTAGGTGTTGATTTGTGGAGTGCTGGATGCATTCTTGCAGAGCTCCTGTATGGAAAGCCCATAATGCCTGGGCGCACTGAGgtgagtcttgaacatggggttgctctgtac---------tctaccatattattttttcagtaatccttggggctatg--ctgttaatatcagaactatggttaaatcttcc-------------------------------------------------------------------------------------
upper sequence: GLYMA13G28650.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv05s0020g01890.t01 (Vitis vinifera), 5'ss of exon 3
TGGGGCCACTGAATATAGTGTAGGAGTGGACCTCTGGAGTGCTGGCTGCATTCTTGCTGAATTATTGGCTGGAAAGCCTATTATGCCTGGTCGAACAGAGgtaatctctatgatggatacactatatagggcttaatgtctatagttgcatcttttaagggcttaatgtgtattcagtttactagtctaaggtgcaaggttttgttgtcgatggcttctcaattttctgctacttgattgtgaaatttgtgcttcagattttactgctataattagcatcctttatgtgttatag
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TGGGGCCACCGAATATGGTGTAGGTGTGGACCTCTGGAGTGCTGGCTGCATTCTAGCTGAGTTATTGGCCGGGAAGCCTATCATGCCTGGTCGCACCGAGgtaacttcaacaatatatatttaaaatgag---ttgttccattgctttgaacttttagttgcattatttgggct--gtttgttatggcgaggtggttattcttgc------------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151397025|gb|EV266898.1|EV266898EST: TTCTTGCTGAATTATTGGCTGGAAAGCCTATTATGCCTGGTCGAACAGAG GTAGAGCAGCTACACAAGATATTCAAACTATGTGGTTCTCCTTCTGACGAA
genomic: TTCTTGCTGAATTATTGGCTGGAAAGCCTATTATGCCTGGTCGAACAGAGgtaatctcta ... tgtgttatagGTAGAGCAGCTACACAAGATATTCAAACTATGTGGTTCTCCTTCTGACGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGGGCCACTGAATATAGTGTAGGAGTGGACCTCTGGAGTGCTGGCTGCATTCTTGCTGAATTATTGGCTGGAAAGCCTATTATGCCTGGTCGAACAGAGgtaatctctatgatggatacactatatagggcttaatgtctatagttgcatcttttaagggcttaatgtgtattcagtttactagtctaaggtgcaaggttttgttgtcgatggcttctcaattttctgctacttgattgtgaaatttgtgcttcagattttactgctataattagcatcctttatgtgttatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA