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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGCGTTTAGCTCGGTTCAAGGTAGAACTAAGCAAATCTGAACAAAATAATGATGATATTCCCAATCAGACGGCTTTTGCAAATAGACATGAACAATCTgtgttggagcagaaatatgtgagagggaatttaatggattcagctagaaactttaccaatggtcttgctgtttctgacaatgaaggcttggaaacatccaatttaattattggcttatgtccagatatgtgtcctggtatacttggattttaaatataagagtgaacctgtgagattttttatattttgattag

Basic information

species Glycine max
transcript GLYMA13G28300.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G28300.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv05s0020g02350.t01 (Vitis vinifera), 5'ss of exon 5
AAAGCGTTTAGCTCGGTTCAAGGTAGAACTAAGCAAATCTGAACAAAATAATGATGATATTCCCAATCAGACGGCTTTTGCAAATAGACATGAACAATCTgtgttggagcagaaatatgtgagagggaatttaatggattcagctagaaactttaccaatggtcttgctgtttctgacaatgaaggcttggaaacatccaatttaattattggcttatgtccagatatgtgtcctggtata---cttggattttaaatataagagtgaacctgtgagattttttatatt---ttgattag------------------------------------
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----------------------------------------------------------------------------------------------------------------------------------------GATGTAGCAAGGAGTTTCCCTGATGGCAATGCTTTAGCTGATCATGAAGGCTTGGAACCACCCAGTATTATTATTGGGTTATGTCCAGATATGTGTCCTGgtatttctcttagcttcttgatctaggagcaaacttgcaaattcaacaattttcagttgcttggtaccatcccatctatgtgaatcaaactactagcttc