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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAAACATTTTAGCAAATGCTGACTGCAAACTGAAGATTTGCGACTTTGGTCTTGCCAGAGTGGCTTTCAATGATACTCCCACTGCTATTTTCTGGACAgtatgaatctttttccctgaaactatctccttcaattgagcatagctctctttctcagttcatctcgtcacctcttaatgtttgtttgcttgcag

Basic information

species Glycine max
transcript GLYMA13G28120.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G28120.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G19010.1 (Arabidopsis thaliana), 5'ss of exon 3
AAAAAACATTTTAGCAAATGCTGACTGCAAACTGAAGATTTGCGACTTTGGTCTTGCCAGAGTGGCTTTCAATGATACTCCCACTGCTATTTTCTGGACAgtatgaatctttttccctgaaactatctccttcaattgagcatagctctctt--tctcagttcatctcgtcacctcttaatgtttgtttgcttgcag
 |||||||| || ||||||||||| |||||||| ||||| || || ||||| ||||| ||||| || ||||||||||| || ||||| || ||||||||  | ||| |  |  |   | ||| |   | ||       ||  ||    | ||  | | |   ||  |  | |  || || || || | || | ||||
CAAAAACATATTGGCAAATGCTGATTGCAAACTCAAGATCTGTGATTTTGGACTTGCAAGAGTCGCATTCAATGATACACCGACTGCGATATTCTGGAC--Tgtgagtagtagtaatttaaa-tgcttactctttacaagtttactctttttggtatgaaaccaattttttat-tcctactgctt-tctgatcgcag

upper sequence: GLYMA13G28120.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv05s0020g02530.t01 (Vitis vinifera), 5'ss of exon 3
AAAAAACATTTTAGCAAATGCTGACTGCAAACTGAAGATTTGCGACTTTGGTCTTGCCAGAGTGGCTTTCAATGATACTCCCACTGCTATTTTCTGGACAgtatgaatctttttc-cctgaaactatctcct-----tcaattg----agcatagctctctttctcagttcatctcgt-cacctcttaatgtt--tgtttgcttgcag-----------------------------------------
||| ||||| ||||||||||||||||||||||| ||||| || |||||||||||||| ||||| || || ||||||||||| |||||||| || |||||||||||  ||||   |   ||    | | || |     |||||||     |  ||  | ||||| | | || |  | ||  |    | |||  |  ||||| | |                                             
AAAGAACATCTTAGCAAATGCTGACTGCAAACTCAAGATCTGTGACTTTGGTCTTGCAAGAGTAGCCTTTAATGATACTCCGACTGCTATATTTTGGACAgtatgcttcttccccatttgtgtgtgtttcttgtcaatcaattgcaatggtctatttttctttgtgacttaaagttgtgtatgggtaaataatgatgtttccctatgaatatctctagaattgacagctttaatttcatgtgattacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11413042|gb|BF425062.1|BF425062
EST:     GCTATTTTCTGGACA                         GATTATGTTGCAACCAGGTGGTATAGGGCTCCTGAGTTGTGTGGATCCNNN
genomic: GCTATTTTCTGGACAgtatgaatct ... ttgcttgcagGATTATGTTGCAACCAGGTGGTATAGGGCTCCTGAGTTGTGTGGATCCTTT