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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGATGGAGAATTTGGTGGTTCAGACTTTGGAGGGTATCCTACTTTGAAGCAGAGAAATGATTCTTTTGATATACGAGAGTCGATGAGTGTGCACTGTGGgtatgttttgctttttgttgaatgtttcccttacttataagttacatctatacccactgaggaatgttctttgtggttataattgtccgtgctagtaattaagcattcttgtacctttttactgacatgaattcattctccatcttcaataatgaatgtgtataccaatcag

Basic information

species Glycine max
transcript GLYMA13G24770.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G24770.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G28240.1 (Arabidopsis thaliana), 5'ss of exon 3
GAGATGGAGAATTTGGTGGTTCAGACTTTGGAGGGTATCCTACTTTGAAGCAGAGAAATGATTCTTTTGATATACGAGAGTCGATGAGTGTGCACTGTGGgtatgttttgctttttgttgaatgtttcccttacttataagttacatct---atacccactgaggaatgttctttgtggttataattgtccgtgctagtaattaagcattcttgtacctttttactgacatgaattcattctccatcttcaataatgaatgtgtataccaatcag
||||   ||| ||||| || ||||| ||||| || |||||||||||||| || || |||||||||||||| ||   |||  | |||||||| || |||||||  || |  |||| ||      |||| | |  | | |    |   | |   ||      ||| || |||||  |  |                                                                                                 
GAGAGACAGAGTTTGGAGGGTCAGATTTTGGTGGTTATCCTACTTTGAAACATAGGAATGATTCTTTTGACATTAAAGAAACAATGAGTGTACATTGTGGgtgagtat--ctttgtggccttggtttacttcccctgtcttctttttttcgaatttgtgttgatgattgttccatcag-------------------------------------------------------------------------------------------------