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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCAGCCTATGCTCATGCTTGGAATCACTGTCGGTGTTGCTCTCAGTGTTGTCTTCCCCTACTGGCTTATCACTGTTCTCATCATCATTCTCTTCATAGgtatgtgtagtaaaaaaaattacttgcaattttgaataaatcaatttttgggccacagtcatagaaaagtgttgtttcattatttgaaaaagaaataatttgtttttaatttttgtgcag

Basic information

species Glycine max
transcript GLYMA13G21310.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G21310.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os03g51650.1 (Oryza sativa), 5'ss of exon 3
TTTCAGCCTATGCTCATGCTTGGAATCACTGTCGGTGTTGCTCTCAGTGTTGTCTTCCCCTACTGGCTTATCACTGTTCTCATCATCATTCTCTTCATAGgtatgtgtagtaaaaaaaattacttgcaattttgaataaatcaatttttgggccacagtcatagaaaagtgttgtttcattatttgaaaaagaaata-atttgtt---tttaatttttgtgcag
|| ||||| ||||||||||| || |||||  |||| || |  ||||| ||  |||||||||||||||| ||||| || |||||||| || |||||||||||| |||  ||  || |||  |  |   ||    ||          ||||| | | | ||| |      |   |||   ||   | || |  ||  |   |||| |    || ||   | |||||
TTCCAGCCCATGCTCATGCTCGGGATCACAATCGGAGTCGAGCTCAGCGTCATCTTCCCCTACTGGCTCATCACCGTCCTCATCATAATCCTCTTCATAGgtttgtacagctaacaaatgtgttgttaagcacgatctggc--gcttttgtggcgctgtcctttgcgtgccctgtgagatcgct-gagattgatgtgtgtttggtgcgcttgatcgat-tgcag

upper sequence: GLYMA13G21310.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0007g04230.t01 (Vitis vinifera), 5'ss of exon 3
TTTCAGCCTATGCTCATGCTTGGAATCACTGTCGGTGTTGCTCTCAGTGTTGTCTTCCCCTACTGGCTTATCACTGTTCTCATCATCATTCTCTTCATAGgtatgtgtagt-----------------aaaaaaaattacttgcaattttg--aataaatcaatttttgggccaca-gtcatagaaaagtgttgtttcattatttgaaaaagaaataatttgtttttaatttttgtgcag------------------
|| ||||| |||||||||||||| |||||||| || || |||||||||||||||||||| ||||||||||| ||  | |||||||||||||| ||||| ||| |||  | |                 ||    || |  ||    ||||   |||   |  ||     |  ||   |||||    |  ||||     | | | ||  |   | || |||  ||   | || |||   |                   
TTCCAGCCCATGCTCATGCTTGGGATCACTGTTGGAGTAGCTCTCAGTGTTGTCTTCCCTTACTGGCTTATAACCATCCTCATCATCATTCTGTTCATGGgtgtgtcaaattctcatccctttattccaatgttaactttttttttttttatcaatcggtagatccccagatcatttgtcatcagtatatgttacgataatctctgtca---agatgattctttcaaatttattgaataatttatgactctggatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192315128|gb|FK009952.1|FK009952
EST:     TGTCTTCCCCTACTGGCTTATCACTGTTCTCATCATCATTCTCTTCATAG                         GGACTTCTTCAAGGTCTTTCTTCAAAGGAATCGAGATGTGGAGGGAAGAGA
genomic: TGTCTTCCCCTACTGGCTTATCACTGTTCTCATCATCATTCTCTTCATAGgtatgtgtag ... ttttgtgcagGGACTTCTTCAAGGTCTTTCTTCAAAGGAATCGAGATGTGGAGGGAAGAGA
EST: gi|192317082|gb|FK007849.1|FK007849
EST:     ATCACTGTTCTCATCATCATTCTCTTCATAG                         GGACTTCTTCAAGGTCTTTCTTCAAAGGAATCGAGATGTGGAGGGAAGAGA
genomic: ATCACTGTTCTCATCATCATTCTCTTCATAGgtatgtgtag ... ttttgtgcagGGACTTCTTCAAGGTCTTTCTTCAAAGGAATCGAGATGTGGAGGGAAGAGA
EST: gi|151406326|gb|EV276141.1|EV276141
EST:     TGTCTTCCCCTACTGGCTTATCACTGTTCTCATCATCATTCTCTTCATAG                         GGACTTCTTCAAGGTCTTTCTTCAAAGGAATCGAGATGTGGAGGGAAGAGA
genomic: TGTCTTCCCCTACTGGCTTATCACTGTTCTCATCATCATTCTCTTCATAGgtatgtgtag ... ttttgtgcagGGACTTCTTCAAGGTCTTTCTTCAAAGGAATCGAGATGTGGAGGGAAGAGA
EST: gi|192317081|gb|FK007848.1|FK007848
EST:     ATCACTGTTCTCATCATCATTCTCTTCATAG                         GGACTTCTTCAAGGTCTTTCTTCAAAGGAATCGAGATGTGGAGGGAAGAGA
genomic: ATCACTGTTCTCATCATCATTCTCTTCATAGgtatgtgtag ... ttttgtgcagGGACTTCTTCAAGGTCTTTCTTCAAAGGAATCGAGATGTGGAGGGAAGAGA