Sequence
atgc intronic sequence ATGC exonic sequenceCAAGTTTTTGGATGAATTTTCCTAAAGAAGGTTCTCAATTGACACCTCCTCATCAATCAGAGGGTTTTAAATGGAAAGATTACTGCCCTATGGTATTCAGgtaagtattgacacttgtttagggttatttctttcgtggggcctttttatcattcatctactctctaggcatgcttataaaccaattctttttttttttt...
Basic information
species | Glycine max |
transcript | GLYMA13G20980.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G20980.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G076392_T02 (Zea mays), 5'ss of exon 2
CAAGTTTTTGGATGAATTTTCCTAAAGAAGGTTCTCAATTGACACCTCCTCATCAATCAGAGGGTTTTAAATGGAAAGATTACTGCCCTATGGTATTCAGg-----taagtattgacacttgtttagggttatttctttcgtggggcctttttatcattcatct-actctctaggcatgcttataaaccaattctttttttttttt
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CAAGTTTCTGGATGAACTTCCCCAAAAATGGTTCACGACTTACTCCTTCACATCATGCTGATAATTTTAAATGGAAAGACTACTGCCCAATGGTGTTCAGgtttgttgcgtagtatcccattatcgaggttgtgaacctaa-gcaacttcagtgaaaagaacatgaggccctacagattgtatgagaataacttagtgatc-----
upper sequence: GLYMA13G20980.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0007g04700.t01 (Vitis vinifera), 5'ss of exon 2
CAAGTTTTTGGATGAATTTTCCTAAAGAAGGTTCTCAATTGACACCTCCTCATCAATCAGAGGGTTTTAAATGGAAAGATTACTGCCCTATGGTATTCAGgtaagtattgacacttgtttagggttatttctttcgtggggcctttttatcattcatctactctctaggcatgcttataaaccaattctttttttttttt---------
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CCAGTTTTTGGATGAGCTTTCCAAAAGAAGGATCCCAATTGACACCTCCTCATCAATCAGAAGATTTTAAGTGGAAAGACTACTGCCCAATGGTTTTCAGgttagt-----tgttcatattaggtt--ttctgcagtgcatttgatttat--tttatgtaattacttggcatagttgtgaaattcatcatagcttgttccggctgctct
upper sequence: GLYMA13G20980.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S31_309V6.1 (Physcomitrella patens), 5'ss of exon 3
CAAGTTTTTGGATGAATTTTCCTAAAGAAGGTTCTCAATTGACACCTCCTCATCAATCAGAGGGTTTTAAATGGAAAGATTACTGCCCTATGGTATTCAGgta-agtat------tgacacttgtttagggtt--atttctttcgtgg----ggcctttttatcattcatctactctctaggcatgcttat-aaaccaattctttttttttttt
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CCAGTATACACATGAATTTTCCGAAGGCTGGGACGCCAATGACCCCTATTCACAGTTCATCTGATTTTAAGTGGAAAGATTACTGTCCTATGGTTTTCAGgtttaatatctctcctgccatgggttgatgtttttatttttttcgtaaactagccccttgcattatggctcta---tctagccatgtttctcaaagtggttgt-----------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208106375|gb|GD906444.1|GD906444EST: CATCAATCAGAGGGTTTTAAATGGAA-GATTACTGCCCTATGGTATTCAG AAATTTGAGAGAGTTGTTCAAGATTGATGCTGCTGACTA
genomic: CATCAATCAGAGGGTTTTAAATGGAAAGATTACTGCCCTATGGTATTCAGgtaagtattg ... tctgttgcagAAATTTGAGAGAGTTGTTCAAGATTGATGCTGCTGACTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAAGTTTTTGGATGAATTTTCCTAAAGAAGGTTCTCAATTGACACCTCCTCATCAATCAGAGGGTTTTAAATGGAAAGATTACTGCCCTATGGTATTCAGgtaagtattgacacttgtttagggttatttctttcgtggggcctttttatcattcatctactctctaggcatgcttataaaccaattctttttttttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtggggc