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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGGGCATAGACATTTATATAGCTCATCTCCAATGTTTGAGGGTGAACCTGACCAGAACTGGAATCATATGCATATGGATCAACAATATGTGAACCTTGgtaatgttacttgaaatgccttatttttggtttgtattttggtacgtttgccatttttttaatggcaaatatttctaggctagtgtcaagcatcatatcaactatattgaatctctattgcag

Basic information

species Glycine max
transcript GLYMA13G20210.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G20210.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0040g02160.t01 (Vitis vinifera), 5'ss of exon 1
------ATGGGGCATAGACATTTATATAGCTCATCTCCAATGTTTGAGGGTGAACCTGACCAGAACTGGAATCATATGCATATGGATCAACAATATGTGAACCTTGgtaatgttacttgaaatgcctt-atttttggtttgtattttggtacgtttgccatttttttaatggcaaatatttctaggctagtgtcaagcatcatatcaactatattgaatctctattgcag
      ||||||||||||||| | |||| | |||||| ||||||||||||||| |  || ||||  |||||||||||| ||   ||||| |  ||      | | |||| ||  | || ||||||||| |||| |  | |||   |||      |||      ||   |  |   ||||||||    |  |        || |||    |                    
ATCCTTATGGGGCATAGACATCTGTATAACACATCTCAAATGTTTGAGGGTGACCACGATCAGACATGGAATCATATGAATGCTGATCAGCCTTA------CTTGGgtattgaaatttaaaatgcctttatttcttatctgttcattgc----cttgtggcccttaacagtgttgatatttcttt-ttctttctttctttcttattggttt-------------------