1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCTGTCAAGATCTGAATTTCCTCCTGTTGAGTCTGCTATTAATGCTGGAGCTGTACCCTTGCTTGTGCAGTGTCTTTCATTTGGTTCTCCAGATGAACAGgtctgaagtttcatcttcctttgaatgatgttcaatgacttgtatgaatgtttgtactctcaaaaggcttgagcaagcacatctctgtgcatccttatgcaagataatatggaaccagtagtgggaagaaattttcttaatgcttacattttgtggtgaatgtcttctgcag
species | Glycine max |
transcript | GLYMA13G20090.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTGTACCCTTGCTTGTGCAGTGTCTTTCATTTGGTTCTCCAGATGAACAG TTGCTTGAGGCAGCTTGGTGTCTCACAAATATTGCTGCAGGGAATCCAGAAEST: gi|151397313|gb|EV267186.1|EV267186
genomic: CTGTACCCTTGCTTGTGCAGTGTCTTTCATTTGGTTCTCCAGATGAACAGgtctgaagtt ... tcttctgcagTTGCTTGAGGCAGCTTGGTGTCTCACAAATATTGCTGCAGGGAATCCAGAA
EST: CTGTACCCTTGCTTGTGCAGTGTCTTTCATTTGGTTCTCCAGATGAACAG TTGCTTGAGGCAGCTTGGTGTCTCACAAATATTGCTGCAGGGAATCCAGAAEST: gi|11413637|gb|BF425648.1|BF425648
genomic: CTGTACCCTTGCTTGTGCAGTGTCTTTCATTTGGTTCTCCAGATGAACAGgtctgaagtt ... tcttctgcagTTGCTTGAGGCAGCTTGGTGTCTCACAAATATTGCTGCAGGGAATCCAGAA
EST: CTGTACCCTTGCTTGTGCAGTGTCTTTCATGTGGTTCTGCAGATGAACAG TTGCTTGAGGCAGCTTGGTGTCTCACAAATATTGCTGCAGGGAATTCAGAA
genomic: CTGTACCCTTGCTTGTGCAGTGTCTTTCATTTGGTTCTCCAGATGAACAGgtctgaagtt ... tcttctgcagTTGCTTGAGGCAGCTTGGTGTCTCACAAATATTGCTGCAGGGAATCCAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGTCAAGATCTGAATTTCCTCCTGTTGAGTCTGCTATTAATGCTGGAGCTGTACCCTTGCTTGTGCAGTGTCTTTCATTTGGTTCTCCAGATGAACAGgtctgaagtttcatcttcctttgaatgatgttcaatgacttgtatgaatgtttgtactctcaaaaggcttgagcaagcacatctctgtgcatccttatgcaagataatatggaaccagtagtgggaagaaattttcttaatgcttacattttgtggtgaatgtcttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG