1 5' 3' | 2 5' 3' | 3 5' 3' |
TCCACTTCTTCCTCCTGAGAATTGTATATCAAAGCTCATTACTCGATCAGATGATACTGAAGCAGTGGTCAAAGAAAGGCTTCGAATATACAATGAAATGgtattgctgcacaattatattattattaattttgggacttcaggaagatcggctgcttgaatggcttcttttttgtagttgtatatttatctttattgtg...
species | Glycine max |
transcript | GLYMA13G19880.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATGATACTGAAGCAGTGGTCAAAGAAAGGCTTCGAATATACAATGAAATG ACTCAGC-TGTG-AGGA-TTTTACEST: gi|254346337|gb|GR856059.1|GR856059
genomic: ATGATACTGAAGCAGTGGTCAAAGAAAGGCTTCGAATATACAATGAAATGgtattgctgc ... ttgattgcagACTCAGCCTGTGGAGGAATTTTAC
EST: ATGATACTGAAGCAGTGGTCAAAGAAAGGCTTCGA-TATACAATGAAATG ACTCAGCCTGTGGAGGA-TTT-ACCGTTCA-GAG-AAA-TTATTGGAGTTTEST: gi|254338719|gb|GR850030.1|GR850030
genomic: ATGATACTGAAGCAGTGGTCAAAGAAAGGCTTCGAATATACAATGAAATGgtattgctgc ... ttgattgcagACTCAGCCTGTGGAGGAATTTTACCGTTCAAGAGGAAAATTATTGGAGTTT
EST: ATGATACTGAAGCAGTGGTCAAAGAAAGGCTTCGAATATACAATGAAATG ACTCAGCCTGTGGAGGAATTTTACCGTTCAAGAGGAAAATTATTGGAGTTTEST: gi|57574131|gb|CX547106.1|CX547106
genomic: ATGATACTGAAGCAGTGGTCAAAGAAAGGCTTCGAATATACAATGAAATGgtattgctgc ... ttgattgcagACTCAGCCTGTGGAGGAATTTTACCGTTCAAGAGGAAAATTATTGGAGTTT
EST: ATGATACTGAAGCAGTGGTCAAAGAAAGGCTTCGAATATACAATGAAATG ACTCAGCCTGTGGAGGAATTTTACCGTTCAAGAGGAAAATTATTGGAGTTTEST: gi|254328864|gb|GR833236.1|GR833236
genomic: ATGATACTGAAGCAGTGGTCAAAGAAAGGCTTCGAATATACAATGAAATGgtattgctgc ... ttgattgcagACTCAGCCTGTGGAGGAATTTTACCGTTCAAGAGGAAAATTATTGGAGTTT
EST: ATGATACTGAAGCAGTGGTCAAAGAAAGGCTTCGAATATACAATGAAATG ACTCAGCCTGTGGAGGAATTTTACCGTTCAAGAGGAAAATTATTGGAGTTTEST: gi|22931121|gb|BU548260.1|BU548260
genomic: ATGATACTGAAGCAGTGGTCAAAGAAAGGCTTCGAATATACAATGAAATGgtattgctgc ... ttgattgcagACTCAGCCTGTGGAGGAATTTTACCGTTCAAGAGGAAAATTATTGGAGTTT
EST: ACTGAAGCAGTGGTCAAAGAAAGGCTTCGAATATACAATGAAATG ACTCAGCCTGTGGAGGAATTTTACCGTTCAAGAGGAAAATTATTGGAGTTTEST: gi|13479747|gb|BG509090.1|BG509090
genomic: ACTGAAGCAGTGGTCAAAGAAAGGCTTCGAATATACAATGAAATGgtattgctgc ... ttgattgcagACTCAGCCTGTGGAGGAATTTTACCGTTCAAGAGGAAAATTATTGGAGTTT
EST: ACTGAAGCAGTGGTCAAAGAAAGGCTTCGAATATACAATGAAATG ACTCAGCCTGTGGAGGAATTTTACCGTTCAAGAGGAAAATTATTGGAGTTTEST: gi|22524121|gb|BU082932.1|BU082932
genomic: ACTGAAGCAGTGGTCAAAGAAAGGCTTCGAATATACAATGAAATGgtattgctgc ... ttgattgcagACTCAGCCTGTGGAGGAATTTTACCGTTCAAGAGGAAAATTATTGGAGTTT
EST: GTCAAAGAAAGGCTTCGAATATACAATGAAATG ACTCAGCCTGTGGAGGAATTTTACCGTTCAAGAGGAAAATTATTGGAGTTT
genomic: GTCAAAGAAAGGCTTCGAATATACAATGAAATGgtattgctgc ... ttgattgcagACTCAGCCTGTGGAGGAATTTTACCGTTCAAGAGGAAAATTATTGGAGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCACTTCTTCCTCCTGAGAATTGTATATCAAAGCTCATTACTCGATCAGATGATACTGAAGCAGTGGTCAAAGAAAGGCTTCGAATATACAATGAAATGgtattgctgcacaattatattattattaattttgggacttcaggaagatcggctgcttgaatggcttcttttttgtagttgtatatttatctttattgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA