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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATGTTCCCACTACTGAGCAGATAGCATCCTTAAATCTCAAAGAGGGTCAAAATTTGGTAACCTTCAGTTTCTCCACAAGGGTTCTTGGAACACAACAGgttttgacattcattgactgtctaagttcctgtattaagttatatacaatggttgacttttgtttgagagaaattttaattgcataacag

Basic information

species Glycine max
transcript GLYMA13G19730.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G19730.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G09560.1 (Arabidopsis thaliana), 5'ss of exon 3
AAATGTTCCCACTACTGAGCAGATAGCATCCTTAAATCTCAAAGAGGGTCAAAATTTGGTAACCTTCAGTTTCTCCACAAGGGTTCTTGGAACACAACAGgttt--tgacattcattgactgtctaagttcctgtattaagttatatacaatggtt--gacttttgtttgagagaaatttta-------attgcataacag
 ||||| || || | ||| ||||| |||||  | ||||| ||||| ||||| ||| || |||| || |||||||| ||||| ||||||||||||||||||||||  |||   | |      ||  ||  |     |  |        | ||   ||   ||||| ||||   |  | ||||        ||| | ||  ||
TAATGTCCCTACCAATGAACAGATCGCATCTCTGAATCTGAAAGATGGTCAGAATATGATAACATTTAGTTTCTCAACAAGAGTTCTTGGAACACAACAGgtttgttgatggttac-attagttgaaaatttgaaagcacaccgaggaaaactcttctaactttagtttctaattactttttcgttgttattacttattag

upper sequence: GLYMA13G19730.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0040g02800.t01 (Vitis vinifera), 5'ss of exon 2
AAATGTTCCCACTACTGAGCAGATAGCATCCTTAAATCTCAAAGAGGGTCAAAATTTGGTAACCTTCAGTTTCTCCACAAGGGTTCTTGGAACACAACAGgttttgacatt--cattgactgtctaagttcctgtattaagttatatacaat-----ggttgacttt-tgtttgag------agaaattttaattgcataacag
|||| | ||||| ||||||||||| ||||| || || || ||||| ||||||||| ||||||||||||||||||| || ||||||||||||||||||||||| | || |||    |  | | |  || || |  | | ||  | || | | |     || || |||| ||||| |       || || |||   |   | ||||
AAATATCCCCACCACTGAGCAGATTGCATCTTTGAACCTAAAAGAAGGTCAAAATATGGTAACCTTCAGTTTCTCTACCAGGGTTCTTGGAACACAACAGgtct-gatattggtgtctaatattcaaatttcaatttcaatatgtaaaaagtctgttggatgcctttctgtttcaactgctaaggaactttcgct-tttgacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14999753|gb|BI320575.1|BI320575
EST:     AAAATTTGGTAACCTTCAGTTTCTCTACAAGGGTTCTCGGAACACAACAG                         GTTGATGCTCATATTTATTTATGGAAGTGGAATGCAAGAATTGTAATTTCA
genomic: AAAATTTGGTAACCTTCAGTTTCTCCACAAGGGTTCTTGGAACACAACAGgttttgacat ... tgcataacagGTTGATGCTCATATTTATTTATGGAAGTGGAATGCAAGAATTGTAATTTCA
EST: gi|13479791|gb|BG509134.1|BG509134
EST:     AAAATTTGGTAACCTTCAGTTTCTCCACAAGGGTTCTTGGAACACAACAG                         GTTGATGCTCATATTTATTTATGGAAGTGGAATGCAAGAATTGTAATTTCA
genomic: AAAATTTGGTAACCTTCAGTTTCTCCACAAGGGTTCTTGGAACACAACAGgttttgacat ... tgcataacagGTTGATGCTCATATTTATTTATGGAAGTGGAATGCAAGAATTGTAATTTCA
EST: gi|5760836|gb|AI966199.1|AI966199
EST:     AAAATTTGGTAACCTTCAGTTTCTCCACAAGGGTTCTTGGAACACAACAG                         GTTGATGCTCATATT
genomic: AAAATTTGGTAACCTTCAGTTTCTCCACAAGGGTTCTTGGAACACAACAGgttttgacat ... tgcataacagGTTGATGCTCATATT