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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGATGGCCCAAAACTTGTAAGAGAACTTTTCAGAGTTGCTGATGATCTTTCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaacctccaactttagtattcatgaaggtagggtggggttggaagagtgatgtcttgtatcactctatgagctcttaggattcttttcctacattcatgagcttactaataaatatgtatttacag

Basic information

species Glycine max
transcript GLYMA13G19280.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G19280.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os03g18690.1 (Oryza sativa), 5'ss of exon 3
GAGATGGCCCAAAACTTGTAAGAGAACTTTTCAGAGTTGCTGATGATCTTTCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaacctccaactttagtattcatgaaggtagggtggggttggaagagtgatgtct-tgtatcactctatgagctcttaggattcttttcctaca-ttcatgagcttactaataaatatgtatttacag--------
| |||||||| || |||||||||||| | || || || ||||||||||||||||| || ||||| || ||||| || ||||||||||| || ||||| |||||   |         | |  |   ||||    || ||  |    |  || || || ||| | ||||| | |  | ||    |     |||   |   | | || ||  |  || | || ||  | | |||            
GTGATGGCCCCAAGCTTGTAAGAGAATTGTTTAGGGTGGCTGATGATCTTTCTCCGTCAATTGTCTTTATTGACGAGATTGATGCAGTCGGAACAAAGAGgtagagt---------agtgcatacttcaaatgggaagtcttctatatgatgaatgttgtttgtgtat-agtaaaagattggtggaacttcccatgaaatagtttatatgagtattgatgaacttttttttttctccttatag

upper sequence: GLYMA13G19280.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G104373_T01 (Zea mays), 5'ss of exon 3
GAGATGGCCCAAAACTTGTAAGAGAACTTTTCAGAGTTGCTGATGATCTTTCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaacctccaactt--tagtattcatgaaggtagggtggggttggaagagtgatgtcttgtatcactctatgagctcttaggattcttttcctacattcatgagcttactaataaatatgtatttacag
| ||||| || || ||||| |||||| | ||||| || |||||||||||||||||||| ||||| || |||||||| |||||||| ||||| ||||| |||||  |   || |  || ||   || | | ||     | || |  |     |||   |       |  ||   |   | | |   ||||||||                                          
GTGATGGTCCCAAGCTTGTTAGAGAATTGTTCAGGGTGGCTGATGATCTTTCTCCTTCAATTGTCTTTATTGATGAGATTGATGCTGTTGGGACAAAGAGgtatatcagacatgaaagttaacagcagttattttctttggttatgaaaaaaagctggtgaaagggcctctagcctagtggttaaaggattctgagtagc-----------------------------------

upper sequence: GLYMA13G19280.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G20140.1 (Arabidopsis thaliana), 5'ss of exon 3
GAGATGGCCCAAAACTTGTAAGAGAACTTTTCAGAGTTGCTGATGATCTTTCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaacctccaactttagtattcatgaaggtagggtggggttggaagagtgatgtcttgtatcactctatgagctcttaggattcttttcctacattcatgagcttactaataaatatgtatttacag
||||||| || || ||||| || ||||||||||| ||||||||||| ||||||||||||||||| ||||| || || |||||||| ||||| || ||  ||||    |||  | |||| | |  ||     |  |         |||       |||  | |||  |||    |||   |||    ||   |    || | |  ||     |  |                  
GAGATGGTCCCAAGCTTGTGAGGGAACTTTTCAGGGTTGCTGATGACCTTTCTCCTTCTATTGTTTTCATAGACGAGATTGATGCTGTTGGCACCAAGCGgtatgcctaaa-tacaacataaacatgatccattgataaacaatgtt-----cttga--ttttgc-tcaagagatggtatct---aatatgtgatataaaatggtggttgaaacag-----------------

upper sequence: GLYMA13G19280.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G29040.1 (Arabidopsis thaliana), 5'ss of exon 3
GAGATGGCCCAAAACTTGTAAGAGAACTTTTCAGAGTTGCTGATGATCTTTCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaacctccaactttagtattcatgaaggtagggtggggttggaagagtgatgtcttgtatcactctatgagctcttaggattcttttcctacattcatgagcttactaataaatatgtatttacag
||||||| || || ||||| |||||||||||||||||||||||||| ||||| || || || || ||||| ||||| |||||||| |||||||| ||  ||||| || |||     | |||  ||  | |||   ||        |   ||  || || |  |   |   | | |||      ||                                                
GAGATGGTCCTAAGCTTGTGAGAGAACTTTTCAGAGTTGCTGATGACCTTTCACCATCAATCGTCTTCATAGATGAGATTGATGCTGTTGGTACCAAGCGgtaagttaaact----attttcataaacctgatc-tataacccattgataatggttatctgattacttgttgtttgaaagaacag------------------------------------------------

upper sequence: GLYMA13G19280.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0005g05160.t01 (Vitis vinifera), 5'ss of exon 3
GAGATGGCCCAAAACTTGTAAGAGAACTTTTCAGAGTTGCTGATGATCTTTCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaacctccaactttagtattcatgaaggtagggtggggttggaagagtgatgtcttgtatcactctatgagctcttaggattcttttcctacattcatgagcttactaataaatatgtatttacag
||||||| |||||| | || || ||  | || ||||||||||||||||| || ||||| ||||| |||||||||||||||||||||||||||||||| |||| | |  |      ||| |||||    |||||       |    ||     |||  | | ||       | | | |      |  |||| || |                                      
GAGATGGGCCAAAATTAGTGAGGGAGTTATTTAGAGTTGCTGATGATCTCTCACCTTCAATTGTCTTCATTGATGAAATTGATGCAGTTGGTACAAAGAGgtgagtcga----tgaacattagtg---atgaa----aaatcatatttttcaagttctttttt------ttttttaattatcaaatattccttgcag------------------------------------

upper sequence: GLYMA13G19280.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S12_207V6.1 (Physcomitrella patens), 5'ss of exon 2
GAGATGGCCCAAAACTTGTAAGAGAACTTTTCAGAGTTGCTGATGATCTTTCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaacctccaactttagtattcatgaaggtagggtggggttggaagagtgatgtcttgtatcactctatgagctcttaggattcttttcctacattcatgagcttactaataaatatgtatttacag
| ||||| || ||  | ||  ||||  | ||  | || || |||||  | |||||||| ||||| || ||||| |||||||||||||| |||||||| ||||| ||||    ||| | ||   |  | || |   |    |    ||         || |   | | | ||          |   |||||  || |   | |                               
GGGATGGACCTAAGTTGGTGCGAGAGTTATTTCGGGTCGCGGATGAATTATCTCCTTCCATTGTCTTTATTGACGAAATTGATGCAGTGGGTACAAAGAGgtacttttcgggtcctaatt--attgtaataagcatcat-tctaattaagttctccattttgagcacctcttcgctgaggttggcgattccattgcggaactt------------------------------

upper sequence: GLYMA13G19280.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S4_277V6.1 (Physcomitrella patens), 5'ss of exon 3
GAGATGGCCCAAAACTTGTAAGAGAACTTTTCAGAGTTGCTGATGATCTTTCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaacctccaactttagtattcatgaaggtagggtggggttggaagagtgatgtcttgtatcactctatgagctcttaggattcttttcctacattcatgagcttactaataaatatgtatttacag
||||||| || ||  | ||  |||| || ||  | || |||||||| || |||||| | ||||| || || |||||||||||||| || ||||||||||||||||| |  ||| |  ||  | ||||  |  |  |  ||||    |   |  ||   |  |  |   ||   |    |||| | | ||        ||  | ||                            
GAGATGGACCGAAGTTGGTGCGAGAGCTATTTCGGGTGGCTGATGAACTGTCTCCTACCATTGTTTTTATCGATGAAATTGATGCTGTCGGTACAAAAAGgtaattctggcctgcttctc-attattttt--atttgcggtgtttctcataatgtttcgattcttgcaaccaca----ctctcaaggttgccactgcactcttatct--------------------------

upper sequence: GLYMA13G19280.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ20767 (Selaginella moellendorffii), 5'ss of exon 3
GAGATGGCCCAAAACTTGTAAGAGAACTTTTCAGAGTTGCTGATGATCTTTCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaacctccaactttagtattcatgaaggtagggtggggttggaagagtgatgtcttgtatcactctatgagctcttaggattcttttcctacattcatgagcttactaataaatatgtatttacag
|||| || || || ||||| || || || ||  | ||||| || ||||||||||| || ||||| |||||||| || |||||||| ||||| || ||||||| ||||           | | | |   |  ||    |       ||   |                                                                                  
GAGACGGTCCTAAGCTTGTTAGGGAGCTCTTTCGCGTTGCGGACGATCTTTCTCCGTCCATTGTGTTCATTGACGAGATTGATGCTGTTGGAACGAAAAGgtgatttcgttgcatggttgttgcagaaactaattgggaacaaccttctcaag--------------------------------------------------------------------------------

upper sequence: GLYMA13G19280.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ32659 (Selaginella moellendorffii), 5'ss of exon 3
GAGATGGCCCAAAACTTGTAAGAGAACTTTTCAGAGTTGCTGATGATCTTTCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaacctccaactttagtattcatgaaggtagggtggggttggaagagtgatgtcttgtatcactctatgagctcttaggattcttttcctacattcatgagcttactaataaatatgtatttacag
|||| || || || ||||| || || || ||  | ||||| || ||||||||||| || ||||| |||||||| || |||||||| ||||| || ||||||| ||||         || |   | ||   |||  ||        | |||| |    | ||| |                                                                     
GAGACGGTCCTAAGCTTGTTAGGGAGCTCTTTCGCGTTGCGGACGATCTTTCTCCGTCCATTGTGTTCATTGACGAGATTGATGCTGTTGGAACGAAAAGgtgatttcgtt-----acatggttgttgcagaaactaat------tgggaacaaccttctctag---------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193644834|gb|FK588724.1|FK588724
EST:     TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAG                         GTNTGATGCTCACTCAGGAGGAG
genomic: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGAGGAG
EST: gi|193605786|gb|FK556036.1|FK556036
EST:     TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAG                         GTATGATGCTCACTCAGGAGGAGAACGTG
genomic: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGAGGAGAACGTG
EST: gi|207831391|gb|GD801655.1|GD801655
EST:     TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAG                         GTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGA
genomic: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGA
EST: gi|6482368|gb|AW201633.1|AW201633
EST:     TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAG                         GTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAA-GGACCATGCTAGA
genomic: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGA
EST: gi|207835918|gb|GD807357.1|GD807357
EST:     TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAG                         GTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGA
genomic: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGA
EST: gi|27424837|gb|CA936357.1|CA936357
EST:     TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAG                         GTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGA
genomic: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGA
EST: gi|15664004|gb|BI701375.1|BI701375
EST:     TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAG                         GTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGA
genomic: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGA
EST: gi|193402495|gb|FK365571.1|FK365571
EST:     GATGAAATTGATGCAGTTGGTACAAAAAG                         GTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGA
genomic: GATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGA
EST: gi|254325091|gb|GR834516.1|GR834516
EST:     TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAG                         GTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGA
genomic: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGA
EST: gi|10709031|gb|BF008692.1|BF008692
EST:     TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAG                         GTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGA
genomic: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGA
EST: gi|193451188|gb|FK420114.1|FK420114
EST:     TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAG                         GTNTGATGCTCACTCAGGAGGAGAACGTG
genomic: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGAGGAGAACGTG
EST: gi|208139746|gb|GD939408.1|GD939408
EST:     TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAG                         GTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGA
genomic: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGA
EST: gi|58017107|gb|CX703849.1|CX703849
EST:     TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAG                         GTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGA
genomic: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGA
EST: gi|193692734|gb|FK632865.1|FK632865
EST:     TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAG                         GTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGA
genomic: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGA
EST: gi|208044678|gb|GD840654.1|GD840654
EST:     CTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTAACAAAAAG                         GTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAG
genomic: CTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGT-ACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAG
EST: gi|13791396|gb|BG653987.1|BG653987
EST:     TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAG                         GTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAA
genomic: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAA
EST: gi|207799473|gb|GD769242.1|GD769242
EST:     TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAG                         GTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGTCTAG
genomic: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATG-CTAG
EST: gi|207827660|gb|GD800813.1|GD800813
EST:     TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAG                         GTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGA
genomic: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGA
EST: gi|6846539|gb|AW348829.1|AW348829
EST:     TCTCCTNCTANTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAG                         GTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGA
genomic: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGA