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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGAGATGGATGGTTGTAAAAGGTGAAAAGATAGTTTTTCCTGGTGGAGGAACCCACTTCCATTATGGTGCTGACAAATATATTGCATCAATTGCCAATgtaagctagttactcctatctagtttggcactaaaataatcaccaaaacataaaactcttatatgactggaaaaagttgtaactttattgtttatattcatgattggtattacag

Basic information

species Glycine max
transcript GLYMA13G18630.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G18630.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G23300.1 (Arabidopsis thaliana), 5'ss of exon 4
CCAGAGATGGATGGTTGTAAAAGGTGAAAAGATAGTTTTTCCTGGTGGAGGAACCCACTTCCATTATGGTGCTGACAAATATATTGCATCAATTGCCAATgtaagctagttactcctatctagtttggcactaaaataatcaccaaaacataaaactcttatatgactggaaaaagttgtaactttattgtttatattcatgattggtattacag
||| |  ||||||||||| ||||| || || ||   ||| ||||||||||| || || || |||||||||||||| || |||||||||||||| || ||||||||  |||||||   ||||  | ||| |   |  |      | |  | | |    || |||  | |     || ||| |                                  
CCAAAACTGGATGGTTGTTAAAGGAGAGAAAATCAATTTCCCTGGTGGAGGCACACATTTTCATTATGGTGCTGATAAGTATATTGCATCAATGGCAAATgtaaggcagttactag-atcttatgtggaatagaggtgtgtgtccat-cttcatttactgatactattcatggaaattgcag---------------------------------

upper sequence: GLYMA13G18630.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G14360.1 (Arabidopsis thaliana), 5'ss of exon 4
CCAGAGATGGATGGTTGTAAAAGGTGAAAAGATAGTTTTTCCTGGTGGAGGAACCCACTTCCATTATGGTGCTGACAAATATATTGCATCAATTGCCAATgtaagctagttactcctatctagtttggcactaaaata---atcaccaaaacataaaactcttatatgactggaaaaagttgtaactttattgtttatattcatgattggtattacag
||| |  ||||||||||| ||||| || |||||   ||| ||||||||||| || || || |||||||||||||| || ||||||||||| || || ||||||||  |||||| | |   |  ||   ||  | ||     || |      |||       || |||   ||||||   ||                                     
CCAAAACTGGATGGTTGTCAAAGGAGATAAGATTAATTTCCCTGGTGGAGGCACACATTTTCATTATGGTGCTGATAAGTATATTGCATCGATGGCAAATgtaaggaagttacacttgg-tgtttgtacaagagaacgtatattattctttcatttgctaattgtattcttggaaatttttcag----------------------------------

upper sequence: GLYMA13G18630.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0005g03630.t01 (Vitis vinifera), 5'ss of exon 3
CCAGAGATGGATGGTTGTAAAAGGTGAAAAGATAGTTTTTCCTGGTGGAGGAACCCACTTCCATTATGGTGCTGACAAATATATTGCATCAATTGCCAATgtaagctagttactcctatctagtttggcactaaaataatca-ccaaaac--ataaaactctta----tatgactggaaaaagttgtaactttattgtttatattcat--gattggtattacag
|||||  ||||||||||| |||||||||||||| |  ||||||||||| ||||| || || |||||||| |||||||| |||||||| |||||||| |||||||| | |||  |   |              |||||    | |||| ||   ||||    |||    | ||  ||      | || |    |  || | || || |   ||||||  |  |||
CCAGAACTGGATGGTTGTCAAAGGTGAAAAGATTGCATTTCCTGGTGGTGGAACTCATTTTCATTATGGAGCTGACAAGTATATTGCCTCAATTGCAAATgtaagttggttctttacaatgtccaaaagggaaaaatggaaagccaagacttgtaaatacattaatcttgtgcttgtgttctgctgaataagtgatgatcatttttaatggattggactggcag