Sequence
atgc intronic sequence ATGC exonic sequenceGAATTTTCACGTGCTAACTTATGAGGATCAAGAAGGGGACTGGATGATGGTTGGAGATGTGCCGTGGGAgtaagtgatacatatatgtctcaaaattgaactcttaaatcctattagctccatttttcagtgtatttttttaacccttttgtatttgatgattaatacag
Basic information
species | Glycine max |
transcript | GLYMA13G17750.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G17750.3 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G074742_T01 (Zea mays), 5'ss of exon 3
-------------------------------GAATTTTCACGTGCTAACTTATGAGGATCAAGAAGGGGACTGGATGATGGTTGGAGATGTGCCGTGGGAgtaagtgatacatatatgtctcaaaattgaactcttaaatcctattagct--ccatttttcagtgtatttttttaacccttttgtatttgatgattaatacag
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TGGAGTACCATCAGCGGGTTCCTCACGAGAAGGCCGCGCATGTTCTCACCTATGAAGACCATGATGGAGACTGGATGATGGTTGGGGATGTACCGTGGGAgtaa-tgtttcttctccgctcaaatgattcactcttgcatttcatttactgttagttaattaata-gtcttgtctccccgtccattttttccggcag------
upper sequence: GLYMA13G17750.3 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM5G853479_T01 (Zea mays), 5'ss of exon 2
-----------------------------GAATTTTCACGTG--CTAACTTATGAGGATCAAGAAGGGGACTGGATGATGGTTGGAGATGTGCCGTGGGAgtaagtgatacatatatgtct-caaaattgaactcttaaatcctattagctccatttttcagtgtatttttttaacccttttgtatttgatgattaatacag
| | ||| || || || ||||| || | || || ||||||||||||||||| ||||| ||||||||||| || | | || | || | | | ||| | | ||||| || | || ||
TGGAGTACCATCAACGAGTTCCTCACGAGAAGCCTGCACATGTTCTCACCTATGAAGACCGGGATGGAGACTGGATGATGGTTGGGGATGTACCGTGGGAgtatgtttctcctcctcctccgcttcatcaatcattattcacctgtgcatttcatttacaagaaactaggatttgttctggcag------------------
upper sequence: GLYMA13G17750.3 (Glycine max), 5'ss of exon 3
lower sequence: Vv05s0020g01070.t01 (Vitis vinifera), 5'ss of exon 3
-------------------------------GAATTTTCACGTGCTAACTTATGAGGATCAAGAAGGGGACTGGATGATGGTTGGAGATGTGCCGTGGGAgtaagtgatacatatatgtctcaaaattgaactcttaaatcctattagctcc---atttttcagtgt-----attttttta---acccttttgtatttgatgattaatacag
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ATCCTCATGTTGGTGGCGCTGATCATTCCGGAAAATATCATATCTTGACTTATGAAGACAAGGAAGGGGACTGGATGATGGTCGGAGATGTTCCTTGGGAgtatgcataacctaattaacatactcacaatcactccattcttcatatttttcatatttttccttgtcagttatttatttatttatttatttccatttgaatatctatag--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192327011|gb|FK015193.1|FK015193EST: ATGAGGATCAAGAAGGGGACTGGATGATGGTTGGAGATGTGCCGTTGGGA GATGTTCTTGAACAGTGTGAAGAGGCTGAAGATCACAAGAGCTGACAGAT
genomic: ATGAGGATCAAGAAGGGGACTGGATGATGGTTGGAGATGTGCCGT-GGGAgtaagtgata ... attaatacagGATGTTCTTGAACAGTGTGAAGAGGCTGAAGATCACAAGAGCTGACAGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAATTTTCACGTGCTAACTTATGAGGATCAAGAAGGGGACTGGATGATGGTTGGAGATGTGCCGTGGGAgtaagtgatacatatatgtctcaaaattgaactcttaaatcctattagctccatttttcagtgtatttttttaacccttttgtatttgatgattaatacag
- - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG