1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGTTGGCAACATTCATCCCCAGGTTACAGATTCCCTTCTTCAAGAGCTTTTTTCAACTGCAGGCGCCCTTGAAGGATGTAAACTTATTAGGAAAGAGAAGgtcagctttgtttatactttataatgatatcttcaaagaaagaaataaatgatggagtgatgtttgataatgtatgatagaattcatgatttccattagc...
species | Glycine max |
transcript | GLYMA13G17200.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTTCAACTGCAGGCGCCCTTGAAGGATGTAAACTTATTAGGAAAGAGAAG TCATCCTATGGCTTTGTGGACTACTTTGATCGCAGTTCTGCTGCATTTGCCEST: gi|208232849|gb|GE030376.1|GE030376
genomic: TTTCAACTGCAGGCGCCCTTGAAGGATGTAAACTTATTAGGAAAGAGAAGgtcagctttg ... ttatttgcagTCATCCTATGGCTTTGTGGACTACTTTGATCGCAGTTCTGCTGCATTTGCC
EST: TTTCAACTGCAGGCGCCCTTGAAGGATGTAAACTTATTAGGAAAGAGAAG TCATCCTATGGCTTTGTGGACTACTTTGATCGEST: gi|193545482|gb|FK503989.1|FK503989
genomic: TTTCAACTGCAGGCGCCCTTGAAGGATGTAAACTTATTAGGAAAGAGAAGgtcagctttg ... ttatttgcagTCATCCTATGGCTTTGTGGACTACTTTGATCG
EST: CCCTTGAAGGATGTAAACTTATTAGGAAAGAGAAG TCATCCTATGGCTTTGTGGACTACTTTGACCGCAGTTCTGCTGCATTTGCCEST: gi|13252197|gb|BG363100.1|BG363100
genomic: CCCTTGAAGGATGTAAACTTATTAGGAAAGAGAAGgtcagctttg ... ttatttgcagTCATCCTATGGCTTTGTGGACTACTTTGATCGCAGTTCTGCTGCATTTGCC
EST: TTTCAACTGCAGGCGCCCTTGAAGGATGTAAACTTATTAGGAAAGAGAAG TCATCCTATGGCTTTGTGGACTACTTTGATCGCAGTTCTGCTGCATTTGCCEST: gi|193328920|gb|FK295164.1|FK295164
genomic: TTTCAACTGCAGGCGCCCTTGAAGGATGTAAACTTATTAGGAAAGAGAAGgtcagctttg ... ttatttgcagTCATCCTATGGCTTTGTGGACTACTTTGATCGCAGTTCTGCTGCATTTGCC
EST: TTTCAACTGCAGGCGCCCTTGAAGGATGTAAACTTATTAGGAAAGAGAAG TCATCCTATGGCTTTGTGGACTACTTTGATCGCAGTTCTGCTGCEST: gi|208052196|gb|GD853481.1|GD853481
genomic: TTTCAACTGCAGGCGCCCTTGAAGGATGTAAACTTATTAGGAAAGAGAAGgtcagctttg ... ttatttgcagTCATCCTATGGCTTTGTGGACTACTTTGATCGCAGTTCTGCTGC
EST: TTTCAACTGCAGGCGCCCTTGAAGGATGTAAACTTATTAGGAAAGAGAAG TCATCCTATGGCTTTGTGGACTACTTTGATCGCAGTTCTGCTGCATTTGCCEST: gi|13789938|gb|BG652529.1|BG652529
genomic: TTTCAACTGCAGGCGCCCTTGAAGGATGTAAACTTATTAGGAAAGAGAAGgtcagctttg ... ttatttgcagTCATCCTATGGCTTTGTGGACTACTTTGATCGCAGTTCTGCTGCATTTGCC
EST: TTTCAACTGCTGGCGCCCTTGAAGGAT-TAAACTTATTAGGAAAGAGAAG TCATCCTATGGCTTTGTGGACTACTTTGATCGCAGTTCTGCTGCATTTGCCEST: gi|19348273|gb|BM892805.1|BM892805
genomic: TTTCAACTGCAGGCGCCCTTGAAGGATGTAAACTTATTAGGAAAGAGAAGgtcagctttg ... ttatttgcagTCATCCTATGGCTTTGTGGACTACTTTGATCGCAGTTCTGCTGCATTTGCC
EST: TTTCAACTGCAGGCGCCCTTGAAGGATGTAAACTTATTAGGAAAGAGAAG TCATCCTATGGCTTTGTGGACTACTTTGATCGCAGTTCTGCTGCATTTGCCEST: gi|193355897|gb|FK319124.1|FK319124
genomic: TTTCAACTGCAGGCGCCCTTGAAGGATGTAAACTTATTAGGAAAGAGAAGgtcagctttg ... ttatttgcagTCATCCTATGGCTTTGTGGACTACTTTGATCGCAGTTCTGCTGCATTTGCC
EST: TTTCAACTGCAGGCGCCCTTGAAGGATGTAAACTTATTAGGAAAGAGAAG TCATCCTATGGCTTTGTGGACTACTTTGATCGCAGTTCTGCTGCATTTGCCEST: gi|42723064|gb|CK768963.1|CK768963
genomic: TTTCAACTGCAGGCGCCCTTGAAGGATGTAAACTTATTAGGAAAGAGAAGgtcagctttg ... ttatttgcagTCATCCTATGGCTTTGTGGACTACTTTGATCGCAGTTCTGCTGCATTTGCC
EST: TTTCAACTGCAGGCGCCCTTGAAGGATGTAAACTTATTAGGAAAGAGAAG TCATCCTATGGCTTTGTGGACTACTTTGATCGCAGTTCTGCTGCATTTGCC
genomic: TTTCAACTGCAGGCGCCCTTGAAGGATGTAAACTTATTAGGAAAGAGAAGgtcagctttg ... ttatttgcagTCATCCTATGGCTTTGTGGACTACTTTGATCGCAGTTCTGCTGCATTTGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTGGCAACATTCATCCCCAGGTTACAGATTCCCTTCTTCAAGAGCTTTTTTCAACTGCAGGCGCCCTTGAAGGATGTAAACTTATTAGGAAAGAGAAGgtcagctttgtttatactttataatgatatcttcaaagaaagaaataaatgatggagtgatgtttgataatgtatgatagaattcatgatttccattagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA