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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTGCAGCTGGAGCTGCAAAGGGTCTAGCCTTTCTACATGAAGCGAAAAAACCAGTCATCTATAGAGATTTCAAAGCTTCAAACATCTTGTTAGACTCGgtgaataatcaattactagtcactttctctggcatactctaattaatgctccgtttgaacaatttcattccgtaatcaatttttaactcactctcttcattcattcttccag

Basic information

species Glycine max
transcript GLYMA13G17050.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G17050.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv11s0016g01060.t01 (Vitis vinifera), 5'ss of exon 3
AATTGCAGCTGGAGCTGCAAAGGGTCTAGCCTTTCTACATGAAGCGAAAAAACCAGTCATCTATAGAGATTTCAAAGCTTCAAACATCTTGTTAGACTCGgtgaataatcaattactagtcactttctctggcatactctaattaatgctccgtttgaacaatttcattccgtaatcaatttttaact-cactctcttcattcattcttccag
|||||||  ||| |||||||||||| |||| || || ||||||||| | ||||| || || ||| ||||||| || ||||||||||||||||| ||||| ||    || |   | ||   | |||  |   |  |||| | |  | || |  ||| |  |  | |   |    ||| |  || |      ||| | ||||             
AATTGCACTTGGGGCTGCAAAGGGTTTAGCTTTCCTCCATGAAGCGGAGAAACCTGTTATATATCGAGATTTTAAGGCTTCAAACATCTTGTTGGACTCTgt----aagcttctgctccccccttgtttgagagtactttcagcattgtt--gttgg--ctttctttgtgatcaatgaccttatggtgatactattttcag------------