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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGCAGAAGACTTGCAAGGGAGAATGCAAAGGACATCATTGCTTGTGGTTTTGACATTTCAAAGACGTTCATCTTCTCTGATTTCAATTATGTTGGCGGgtgagttataaatgcaggtttgccctgatagtacattttttaccatgctttcctattgtatgcggagattttgttaaatcatagtttagttaaagtttta...

Basic information

species Glycine max
transcript GLYMA13G11390.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G11390.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os12g35570.3 (Oryza sativa), 5'ss of exon 3
AGTGCAGAAGACTTGCAAGGGAGAATGCAAAGGACATCATTGCTTGTGGTTTTGACATTTCAAAGACGTTCATCTTCTCTGATTTCAATTATGTTGGCGGgtgag-----ttataaatgcaggtttgccctgatagtacattttttacca----------tgctttcctattgtatgcggagattttgttaaatcatagtttagttaaagtttta---------------------
|    | ||| |||||  | || |||||||| || |||||||||||||| |||||  |   || ||| ||||| ||||||||||| ||||||||||| |||| ||     |  ||| || ||  |||   | ||  | ||||| | || |          || | | ||  |      | |  | |||  |  |  |  ||   |  ||   | |                     
AAACTAAAAGGCTTGCCCGTGAAAATGCAAAAGATATCATTGCTTGTGGATTTGATGTCGAAAGGACTTTCATTTTCTCTGATTTTAATTATGTTGGAGGgtaaggttcttcttaactgtagtcttgattt-atctttcatttatgactaatttaatgactgttcttctgctaagcaagtaattcttgagatttatttattctatagaaaagtaatcctctgtcattttcttacag

upper sequence: GLYMA13G11390.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv12s0028g03370.t01 (Vitis vinifera), 5'ss of exon 3
AGTGCAGAAGACTTGCAAGGGAGAATGCAAAGGACATCATTGCTTGTGGTTTTGACATTTCAAAGACGTTCATCTTCTCTGATTTCAATTATGTTGGCGGgtgagttataaatgcaggtttgccctgatagtacattttttaccatgctt-tcctattgtatgcggagattttgtt-aaatcatagtttagttaaagtttta----
|  ||  |||||||||  | |||||||| || ||||| || || ||||||||||||||||| |  || ||||| ||||| |||||  |||||||||| |||| ||| |||  ||||  |      |      ||| |||  |  |    | | ||| || |     | ||||  || |||||| | |  | ||| ||| ||     
AAAGCCAAAGACTTGCTCGTGAGAATGCTAAAGACATTATAGCATGTGGTTTTGACATTTCTAGAACCTTCATTTTCTCAGATTTTGATTATGTTGGAGGgttagtaata--tgcatatcaagtttagcta-acaatttagagtacaagtattctagtg-acatttaaatttcattgaaatcacaat--aattacagtattgcttc