Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGGTCCATACTTTTGTCAGCCTGTAATTGCTGGATTAGGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaattattttacagtccatattttcttgtagagggaggtcggtatgtttaaaatcttgctagtgttagcaatgtgtagtataaatgtataaag...

Basic information

species Glycine max
transcript GLYMA13G10130.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G10130.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv18s0001g02260.t01 (Vitis vinifera), 5'ss of exon 4
GTTTGGTCCATACTTTTGTCAGCCTGTAATTGCTGGATTAGGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaattattttacagtccatattttcttgtagagggaggtcggtatgtttaaaatcttgctagtgttagcaatgtgt-agtataaatgtataaag-
||||||||||||||| || |||||||| ||||||||||| || ||||||||||| |||||||| |||||||||||||   |||| || ||||| ||||||||  ||  |       |  |||| || ||   |     |||  | |   | | | || | |||    |||||| || |||  ||   |    
GTTTGGTCCATACTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGACAAGCCATTCATTTGCACAATGGATTCAATTGGAGCCAAgtatgttgaatttcttcgcttgtgtaaccttctcgtggactcatagttgtacatatgtcagcatact-gagttgtacatgtgtcagcatac-tgaggattct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58023417|gb|CX710158.1|CX710158
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|207815424|gb|GD788631.1|GD788631
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|193727650|gb|FK664490.1|FK664490
EST:     TCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
genomic: TCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|298164208|gb|HO013853.1|HO013853
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGAACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|298178487|gb|HO024222.1|HO024222
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGAACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|14009264|gb|BG725868.1|BG725868
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|213616908|gb|DB978898.1|DB978898
EST:     GGGGATGAAGACAAACCATTGGTCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGAACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|254322957|gb|GR835672.1|GR835672
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|26047843|gb|CA784499.1|CA784499
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|192295475|gb|FG987089.1|FG987089
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|58023718|gb|CX710459.1|CX710459
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|193520562|gb|FK475557.1|FK475557
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|298198213|gb|HO039752.1|HO039752
EST:     GGGGATGAAGACAAACCATACATCTGCACAATGGACTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGAACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|23732782|gb|BU764563.1|BU764563
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|192298335|gb|FG992110.1|FG992110
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|192319626|gb|FK013710.1|FK013710
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|298170344|gb|HO018968.1|HO018968
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGAACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|209717219|gb|BW657688.1|BW657688
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGAACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|254322956|gb|GR835671.1|GR835671
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|209721449|gb|BW671657.1|BW671657
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGNGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGAACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|298164572|gb|HO014217.1|HO014217
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGAACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|192325391|gb|FK018362.1|FK018362
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCCGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|298191360|gb|HO038839.1|HO038839
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGAACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|7588683|gb|AW704473.1|AW704473
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|22933839|gb|BU550978.1|BU550978
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|151393124|gb|EV262999.1|EV262999
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|21285997|gb|BQ473868.1|BQ473868
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTT
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTT
EST: gi|192331428|gb|FK023391.1|FK023391
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|209717218|gb|BW657687.1|BW657687
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGAACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|120533789|gb|EH261922.1|EH261922
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|192298336|gb|FG992111.1|FG992111
EST:     GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATTTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|193694577|gb|FK627733.1|FK627733
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|207775463|gb|GD746866.1|GD746866
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGA
EST: gi|57574580|gb|CX547555.1|CX547555
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|7588884|gb|AW704670.1|AW704670
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|58019721|gb|CX706463.1|CX706463
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|13240408|gb|BG359717.1|BG359717
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGAACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|298163713|gb|HO012446.1|HO012446
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGAACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|213613997|gb|DB960962.1|DB960962
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGAACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|10238976|gb|BE807864.1|BE807864
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|208079584|gb|GD873686.1|GD873686
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTT
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTT
EST: gi|192297363|gb|FG990669.1|FG990669
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|207766114|gb|GD735559.1|GD735559
EST:     TCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
genomic: TCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|208303140|gb|GE101409.1|GE101409
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCCGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|6847346|gb|AW349636.1|AW349636
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|17400469|gb|BM177251.1|BM177251
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|298165026|gb|HO011075.1|HO011075
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGAACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|254330596|gb|GR841861.1|GR841861
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|192331458|gb|FK023392.1|FK023392
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|298172643|gb|HO019683.1|HO019683
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGAACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|7684912|gb|AW755560.1|AW755560
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|254344206|gb|GR855291.1|GR855291
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
EST: gi|31309035|gb|CD394238.1|CD394238
EST:     GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaa ... ttgtttgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTTGGTCCATACTTTTGTCAGCCTGTAATTGCTGGATTAGGGGATGAAGACAAACCATTCATCTGCACAATGGATTGTCTTGGGGCAAAgtaagttgaattattttacagtccatattttcttgtagagggaggtcggtatgtttaaaatcttgctagtgttagcaatgtgtagtataaatgtataaag

- - - - - - - - - - - - - - - - - - - - - -  TGAAGA