Sequence
atgc intronic sequence ATGC exonic sequenceGCCATGGTAGCGGTATTTGCTACGCACCGTTTGTTGTTCCCAAGCCAGGCATTTGACCTGATCCATTGTTCAAGATGCAGAATTAATTGGACTCGTGATGgtagttcctctctctgtttaaacctttcatctcctagcttttctatagtttttttttttaaagtttgtgtgaaaacatgtagtgccttgtgactaaaaca...
Basic information
species | Glycine max |
transcript | GLYMA13G09520.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G09520.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G77260.1 (Arabidopsis thaliana), 5'ss of exon 3
GCCATGGTAGCGGTATTTGCTACGCACCGTTTGTTGTTCCCAAGCCAGGCATTTGACCTGATCCATTGTTCAAGATGCAGAATTAATTGGACTCGTGATGgtagttcctctctctgtttaaacctttcatctcctagcttttctatagtttttttttttaaagtttgtgtgaaaacatgtagtgccttgtgactaaaaca-
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GCGATGGTGGCTGTCTTTGCCACACGGAGGTTGTTGTATCCAAGCCAGTCTTTTGAGATGATTCATTGTTCCAGATGCAGAATTAATTGGACACGCGATGgttaatt-tctggctttttg-----cttctcctctaatgttatttgagctttagcatagtaagtgact---acagcattttgtttct-atgaattacacag
upper sequence: GLYMA13G09520.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv18s0001g01600.t01 (Vitis vinifera), 5'ss of exon 3
GCCATGGTAGCGGTATTTGCTACGCACCGTTTGTTGTTCCCAAGCCAGGCATTTGACCTGATCCATTGTTCAAGATGCAGAATTAATTGGACTCGTGATGgtagttcctctctctgtttaaacctttcatctcctagcttttctatagtttttttttttaaagtttgtgtgaaaacatgtagtgccttgtgactaaaaca---
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GCCATGGTAGCAGTATTTGCGACACACCGGTTGTTATATCCAAGCCAGGCTTTTGACTTGATACATTGCTCAAGATGTAGAATTAATTGGACCCGTGATGgtatgcccccttctcctttgtatttctattaagaaaagctttttccatttaaactgggttaag---aaatgactattggtaaatcttgagcacaaagatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208185790|gb|GD983815.1|GD983815EST: ATTTGACCTGATCCATTGTTCAAGATGCAGAATTAATTGGACTCGTGATG ATGGAATTTTGCTTCTTGAGGCCAACAGGCTCCTGAGGGCGGGTGGCTACT
genomic: ATTTGACCTGATCCATTGTTCAAGATGCAGAATTAATTGGACTCGTGATGgtagttcctc ... tttactggagATGGAATTTTGCTTCTTGAGGCCAACAGGCTCCTGAGGGCGGGTGGCTACT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCCATGGTAGCGGTATTTGCTACGCACCGTTTGTTGTTCCCAAGCCAGGCATTTGACCTGATCCATTGTTCAAGATGCAGAATTAATTGGACTCGTGATGgtagttcctctctctgtttaaacctttcatctcctagcttttctatagtttttttttttaaagtttgtgtgaaaacatgtagtgccttgtgactaaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctc