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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTACAAGCAGGTGTCAAGAATGTTGTGACAGAAACTGGTGCTGGACAGTGGGGAAGTGCATTGGCCTTTGCGTGCAGCATATTTGGTCTTGGCTGTGAGgtattgccctatggggattgaattcattaagaatttaactaactgcttgctagtcttggtacatttaactatttgttataatgcgttttgtttacaatta...

Basic information

species Glycine max
transcript GLYMA13G07130.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G07130.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ35538 (Selaginella moellendorffii), 5'ss of exon 2
TTTACAAGCAGGTGTCAAGAATGTTGTGACAGAAACTGGTGCTGGACAGTGGGGAAGTGCATTGGCCTTTGCGTGCAGCATATTTGGTCTTGGCTGTGAGgtattgccctatggggattgaattcattaagaatttaactaactgcttgctagtcttggtacatttaactatttgttataatgcgttttgtttacaatta
|    | | |||  |||||  | |    || |||||||||||||||||||||||||| ||  |||| ||||| |||   || ||   ||| | ||| |||||||  ||   ||  | | | | | |  |||||  ||  ||  |   |   ||                                               
TGCCAAGGAAGGAATCAAGCGTCTCACCACTGAAACTGGTGCTGGACAGTGGGGAAGCGCTCTGGCTTTTGCTTGCTCAATCTTCAATCTCGACTGCGAGgtataaccacttgaagttcgtagtgagaaagaagctatatagttttgttgcag-----------------------------------------------

upper sequence: GLYMA13G07130.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ24275 (Selaginella moellendorffii), 5'ss of exon 2
TTTACAAGCAGGTGTCAAGAATGTTGTGACAGAAACTGGTGCTGGACAGTGGGGAAGTGCATTGGCCTTTGCGTGCAGCATATTTGGTCTTGGCTGTGAGgtattgccctatggggattgaattcattaagaatttaactaactgcttgctagtcttggtacatttaactatttgttataatgcgttttgtttacaatta
|    | | |||  |||||  | |    || |||||||||||||||||||||||||| ||  |||| ||||| |||   || ||   ||| | ||| ||||||| |||   ||  | | | | | |  |||||  ||  ||  ||| |   ||                                               
TGCCAAGGAAGGAATCAAGCGTCTCACCACTGAAACTGGTGCTGGACAGTGGGGAAGCGCTCTGGCTTTTGCTTGCTCAATCTTCAATCTCGACTGCGAGgtatagccacttgaagttcgtagtgagaaagaagctatatagttgcgttgcag-----------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7684669|gb|AW755317.1|AW755317
EST:     GGGGAAGTGCATTGGCCTTTGCGTGCAGCATATTTGGTCTTGGCTGTGAG                         GTGTGGCAAGTACGTGCTTCTTATGATTCAAAACCATATCGGAGATTGATG
genomic: GGGGAAGTGCATTGGCCTTTGCGTGCAGCATATTTGGTCTTGGCTGTGAGgtattgccct ... atatatatagGTGTGGCAAGTACGTGCTTCTTATGATTCAAAACCATATCGGAGATTGATG
EST: gi|151406911|gb|EV276726.1|EV276726
EST:     GGGGAAGTGCATTGGCCTTTGCGTGCAGCATATTTGGTCTTGGCTGTGAG                         GTGTGGCAAGTACGTGCTTCTTATGATTCAAAACCATATCGGAGATTGATG
genomic: GGGGAAGTGCATTGGCCTTTGCGTGCAGCATATTTGGTCTTGGCTGTGAGgtattgccct ... atatatatagGTGTGGCAAGTACGTGCTTCTTATGATTCAAAACCATATCGGAGATTGATG
EST: gi|209702929|gb|BW667451.1|BW667451
EST:     AGTGCATTGGCCTTTGCGTGCAGCATATTTGGTCTTGGCTGTGAG                         GTGTGGCAAGTACGTGCTTCTTATGATTCAAAACCATATCGGAGATTGATG
genomic: AGTGCATTGGCCTTTGCGTGCAGCATATTTGGTCTTGGCTGTGAGgtattgccct ... atatatatagGTGTGGCAAGTACGTGCTTCTTATGATTCAAAACCATATCGGAGATTGATG