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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTGCTCTAGAGCTGCCAGATTCATTTGATCAACTGGTTTCTGATATGAAGAACAATCAATATGATGCGAAAACGTTTGCATTCATGTTAAGGGGAATGgtaagtttcttgttacgcctgcataaagtatcactatcatgaacttcattattaattggtattaagtaaggattgtctgaaattgaattctgttgatgtt...

Basic information

species Glycine max
transcript GLYMA13G05950.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G05950.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G01040.2 (Arabidopsis thaliana), 5'ss of exon 3
ATCTGCTCTAGAGCTGCCAGATTCATTTGATCAACTGGTTTCTGATATGAAGAACAATCAATATGATGCGAAAACGTTTGCATTCATGTTAAGGGGAATGgtaagtttcttgttacgcctgcataaagtatcactatcatgaacttcattattaattggtattaagtaaggattgtctgaaattgaattctgttgatgtt
|  || | || |||| ||||| || |||  |||||||||||| |||||||||||||| || |||||||| ||||| |||||  || | ||  | |  ||||||  ||   |  |   | |  |||||   | |  ||  |  | || ||    || |  ||||   |  |  |  |||    |||||             
AGATGGTTTAAAGCTTCCAGAGTCTTTTAGTCAACTGGTTTCGGATATGAAGAACAACCACTATGATGCTAAAACATTTGCCCTCGTATTTCGAGCTATGgtacattctctaat---cttcaataaaagcttaa-attgtaga-ttgatccgaaacttatatttgatttgattactctt--tttgaacag----------

upper sequence: GLYMA13G05950.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0108g01520.t01 (Vitis vinifera), 5'ss of exon 3
ATCTGCTCTAGAGCTGCCAGATTCATTTGATCAACTGGTTTCTGATATGAAGAACAATCAATATGATGCGAAAACGTTTGCATTCATGTTAAGGGGAATGgtaagtttcttgttacgcctgcataaagtatcactatcatgaacttcattattaattggtattaagtaagg-attgtctgaaattgaattctgttgatgtt
|  || |||| |||| |||||| ||||   |||||| |||||||| ||||||||||| || |||||||| || || ||||| ||||||||| ||| ||||||| ||||| | ||||  | ||| | | ||| | | |  | | |||  |   | |    | |   | |||  | |||||    || |   ||  |  | | 
AGATGGTCTAAAGCTTCCAGATACATTCAGTCAACTTGTTTCTGAAATGAAGAACAAACAGTATGATGCAAAGACATTTGCTTTCATGTTACGGGCAATGgtacgtttcatattaccacagcacatattat-attttgtttatctttttggatgaggtttgtcctgaaagttagtgtctttgtttaatggcttatacttta