Sequence
atgc intronic sequence ATGC exonic sequenceGTGGGTAGGTACAAGAGCCCTGATGAGCATCCATTCTTTCCAGATGGCCTACCCGAACCAGTGTTACCACCTTTGCAGTACCCTCAGgtaaatgatattccttatgttcactttgacagaactatgttttcaggtagatagaataacaatgtgtataattctttaaattcctactgcccaagttgat...
Basic information
species | Glycine max |
transcript | GLYMA13G05830.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G05830.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g55870.1 (Oryza sativa), 5'ss of exon 3
GTGGGTAGGTACAAGAGCCCTGATGAGCATCCATTCTTTCCAGATGGCCTACCCGAACCAGTGTTACCACCTTTGCAGTACCCTCAGgtaaatgatattccttatgttcactttgacagaactatgtttt-caggtagatagaataacaatgtgtataattctttaaattcctactgcccaagttgat
|| || || |||||||||||||||||||| ||||||||||| || | || || |||||| |||| |||||| | ||||| || |||||| ||| | | ||||| | | | | | | ||| || || | | || || || | | || | | ||
GTTGGGAGATACAAGAGCCCTGATGAGCACCCATTCTTTCCGGAGGATCTGCCTGAACCACTGTTGCCACCTCTCCAGTATCCAAAGgtaatgcataaac-tcgtgttcttagacatctagttcttctctgtaggctttcagcattccttttgttagtataggcaaacatagtccttcattgactaat
upper sequence: GLYMA13G05830.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0108g01330.t01 (Vitis vinifera), 5'ss of exon 3
GTGGGTAGGTACAAGAGCCCTGATGAGCATCCATTCTTTCCAGATGGCCTACCCGAACCAGTGTTACCACCTTTGCAGTACCCTCAGgtaaatgatattccttatgttcactttgacagaactatgttttcaggt---agatagaataacaatgtgtataattctttaaat-tcctactgcccaagttgat
||||| |||||||||||||||||||||||||| ||||| |||| || | || |||||| |||| |||||||| |||||||| ||||| ||| | | | | | ||| || | | | || || || | | | || ||| | | | |||| | |||||
GTGGGCAGGTACAAGAGCCCTGATGAGCATCCTTTCTTCCCAGTTGAGTTGCCTGAACCAATGTTGCCACCTTTACAGTACCCAAAGgtatgatataagatgtgtttgaaatatgattactctttttgtccaagttgcagtttgtttggtaac-tgtttgacctccagggcatggtact-cgtaagtta--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16344280|gb|BI969875.1|BI969875EST: NNNAGATGGCCTACCCGNNNNCAGTGTTACCACCTTTGCAGTACCCTCAG GTGTTGCACCCTATTGCTGATTCAATTAATATAAATGAAAAAGTATGGAGT
genomic: TCCAGATGGCCTACCCG-AACCAGTGTTACCACCTTTGCAGTACCCTCAGgtaaatgata ... gtatggatagGTGTTGCACCCTATTGCTGATTCAATTAATATAAATGAAAAAGTATGGAGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGGGTAGGTACAAGAGCCCTGATGAGCATCCATTCTTTCCAGATGGCCTACCCGAACCAGTGTTACCACCTTTGCAGTACCCTCAGgtaaatgatattccttatgttcactttgacagaactatgttttcaggtagatagaataacaatgtgtataattctttaaattcctactgcccaagttgat
- - - - - - - - - - - - - - - - - - - - CAGATG