1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATATGTTGTTATGGAGTATGTGAAATCTGGAGAGCTCTTTGATTACATAGTAGAGAAGGGTCGGCTGCAAGAGGATGAAGCCCGTCATTTTTTTCAGCAGgtataatttgtaatatttttgtgtgcttcagagatttgtgcttgccacattattgaatccaacttatgttatgaaaacag
species | Glycine max |
transcript | GLYMA13G05700.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TAGAGAAGGGTCGGCTGCAAGAGGATGAAGCCCGTCANNNNNNNCAGCAG ATAATTTCTGGTGTGGAGTACTGTCACAGGAATATGGTGGTTCATAGAGACEST: gi|254330248|gb|GR841513.1|GR841513
genomic: TAGAGAAGGGTCGGCTGCAAGAGGATGAAGCCCGTCATTTTTTTCAGCAGgtataatttg ... atgaaaacagATAATTTCTGGTGTGGAGTACTGTCACAGGAATATGGTGGTTCATAGAGAC
EST: TAGAGAAGGGTCGGCTGCAAGAGGATGAAGCCCGTCANNNNNNNCAGCAG ATAATTTCTGGTGTGGAGTACTGTCACAGGAATATGGTGGTTCATAGAGACEST: gi|298197665|gb|HO045144.1|HO045144
genomic: TAGAGAAGGGTCGGCTGCAAGAGGATGAAGCCCGTCATTTTTTTCAGCAGgtataatttg ... atgaaaacagATAATTTCTGGTGTGGAGTACTGTCACAGGAATATGGTGGTTCATAGAGAC
EST: TAGAGAAGGGTCGGCTGCAAGAGGATGAAGCCCGTCANNNNNNNCAGCAG ATAATTTCTGGTGTGGAGTACTGTCACAGGAATATGGTGGTTCATAGEST: gi|19270081|gb|BM886337.1|BM886337
genomic: TAGAGAAGGGTCGGCTGCAAGAGGATGAAGCCCGTCATTTTTTTCAGCAGgtataatttg ... atgaaaacagATAATTTCTGGTGTGGAGTACTGTCACAGGAATATGGTGGTTCATAG
EST: TAGAGAAGGGTCGGCTGCAAGAGGATGAAGCCCGTCANNNNNNNCAGCAG ATAATTTCTGGTGTGGAGTACTGTCACAGGAATATGGTGGTTCATAGAGACEST: gi|209725162|gb|BW659832.1|BW659832
genomic: TAGAGAAGGGTCGGCTGCAAGAGGATGAAGCCCGTCATTTTTTTCAGCAGgtataatttg ... atgaaaacagATAATTTCTGGTGTGGAGTACTGTCACAGGAATATGGTGGTTCATAGAGAC
EST: TAGAGAAGGGTCGGCTGCAAGAGGATGAAGCCCGTCANNNNNNNCAGCAG ATAATTTCTGGTGTGGAGTACTGTC
genomic: TAGAGAAGGGTCGGCTGCAAGAGGATGAAGCCCGTCATTTTTTTCAGCAGgtataatttg ... atgaaaacagATAATTTCTGGTGTGGAGTACTGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATGTTGTTATGGAGTATGTGAAATCTGGAGAGCTCTTTGATTACATAGTAGAGAAGGGTCGGCTGCAAGAGGATGAAGCCCGTCATTTTTTTCAGCAGgtataatttgtaatatttttgtgtgcttcagagatttgtgcttgccacattattgaatccaacttatgttatgaaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC