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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACATACAAGGACACTGGGAAGCAATTTAATGTGATAGCAGCTTCTTGGATTCAATTTATGATTCATGATTGGATCGATCATCTAGAAGATACCAATCAGgtccttatattatacctacgtatatacttatgatctcatatatatatatatatatatatatatatatcctttttctattatacaaatctcacctagtcaa...

Basic information

species Glycine max
transcript GLYMA13G04410.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G04410.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G01420.1 (Arabidopsis thaliana), 5'ss of exon 3
GACATACAAGGACACTGGGAAGCAATTTAATGTGATAGCAGCTTCTTGGATTCAATTTATGATTCATGATTGGATCGATCATCTAGAAGATACCAATCAGgtccttatattatacctacgtatatacttatgatctcatatatatatatatatatatatatatatatcctttttctattatacaaatctcacctagtcaa
 |  |  |  ||||| || || ||||| ||  |||| ||||||||||||||||| || ||||| ||||||||||| |||||||| ||||| ||  | || || | |  ||| ||  ||  | | |  |||     |||| ||   | ||  |  |||  ||||||||  ||||      | |      |     | | | 
AAAGTTTATCGACACGGGAAAACAATTCAACATGATTGCAGCTTCTTGGATTCAGTTCATGATCCATGATTGGATTGATCATCTTGAAGACACTCACCAAgttcgtcaattctat-tatttttctgtttaatccatcatttacgcacatgcacttat-catatatatgtttttaacgaaaaaattgatttggtaacttag

upper sequence: GLYMA13G04410.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0066g01670.t01 (Vitis vinifera), 5'ss of exon 3
GACATACAAGGACACTGGGAAGCAATTTAATGTGATAGCAGCTTCTTGGATTCAATTTATGATTCATGATTGGATCGATCATCTAGAAGATACCAATCAGgtccttatatt--atacctacgtatatactt-----atgatctcatata-tatatatatatatatatatatatatcctttttctattatacaaatctcacc-tagtcaa
    | ||  ||||| || ||||| || ||  |||||||||| ||||||||||| || ||||| ||||||||||| |||||| | || |||||| | |||||| |   |||  | | | || | | |||||     |  || | || || |||  |   ||     ||||   ||  |   |||||  |   ||| ||    |||    
AGATTTCACTGACACGGGAAAGCAGTTCAACATGATAGCAGCGTCTTGGATTCAGTTCATGATACATGATTGGATTGATCATATGGAGGATACCCAGCAGgtcttgccatttaagatcaacttct-tacttgaaatagaatttaatttaatattcaagaatgagattataataattatgaatctatggtctgaatatctttgtag----

upper sequence: GLYMA13G04410.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0066g01690.t01 (Vitis vinifera), 5'ss of exon 4
GACATACAAGGACACTGGGAAGCAATTTAATGTGATAGCAGCTTCTTGGATTCAATTTATGATTCATGATTGGATCGATCATCTAGAAGATACCAATCAGgtccttatattatacctacgtatatacttatgatctcatatatatatatatatatatatatatatatcctttttctattatacaaatctcacctagtcaa
 |  | ||  ||||| || ||||| || ||  |||||||||||||||||||||| || ||||| ||||||||||  ||||| || || |||||| | |||||| |   |||     || | ||  | || | |  | | ||| | || ||  |  ||||| |   ||    ||   |  ||    |   |   |||    
AAATTTCACTGACACGGGAAAGCAGTTCAACATGATAGCAGCTTCTTGGATTCAGTTCATGATACATGATTGGACTGATCACCTGGAGGATACCCAGCAGgtcttgccatt-----taag-atcaatttcttacttgaaataga-atttaatttaatatagaagaatgagattataagaattatgaatgcttgtag----