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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATTGGGTTTAATGTCGAAACAGTGCAGTATAACAACATTAAATTTCAAGTCTGGGATTTAGgtaacgaccatgattcagcaagttctgtataattttgtacttgttgtgcatatgttttcactgcctatgcttgaactaaacagatcttaaaccaacatta...

Basic information

species Glycine max
transcript GLYMA13G01270.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G01270.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S78_17V6.1 (Physcomitrella patens), 5'ss of exon 3
CAATTGGGTTTAATGTCGAAACAGTGCAGTATAACAACATTAAATTTCAAGTCTGGGATTTAGgtaacgaccatgattcagcaagttctgtataattttgtacttgttgtgca---tatgttttcactgcctatgcttgaactaaacagatcttaaaccaacatta
| ||||| |||||||| || || ||||| || ||||| |||||||||||||| |||||| |||||      |  ||       | || | |||  |||  |  |  ||  | |   || |||||   | |       ||||    ||   |  |    ||  |   
CTATTGGCTTTAATGTGGAGACTGTGCAATACAACAATATTAAATTTCAAGTTTGGGATCTAGgttcgtgtcgcgagcacaggatttttttattttttatttataatttggtaatttaagttttttattctctcatgtgaatgtcaccc-ttgtgtgtcaggac--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193596299|gb|FK551304.1|FK551304
EST:     TCAAGTCTGGGATTTAG                         GTGGGCAAACAAGTATCAG
genomic: TCAAGTCTGGGATTTAGgtaacgacca ... gtttatacagGTGGGCAAACAAGTATCAG
EST: gi|192319248|gb|FK009132.1|FK009132
EST:     TGTCGAAACAGTGCAGTATAACAACATTAAATTTCAAGTCTGGGATTTAG                         GTGGGCAAACAAGTATCAG
genomic: TGTCGAAACAGTGCAGTATAACAACATTAAATTTCAAGTCTGGGATTTAGgtaacgacca ... gtttatacagGTGGGCAAACAAGTATCAG
EST: gi|192313159|gb|FK003279.1|FK003279
EST:     TGTCGAAACAGTGCAGTATAACAACATTAAATTTCAAGTCTGGGATTTAG                         GTGGGCAAACAAGTATCAG
genomic: TGTCGAAACAGTGCAGTATAACAACATTAAATTTCAAGTCTGGGATTTAGgtaacgacca ... gtttatacagGTGGGCAAACAAGTATCAG
EST: gi|26047527|gb|CA784291.1|CA784291
EST:     TGTCGAAACAGTGCAGTATAACAACATTAAATTTCAAGTCTGGGATTTAG                         GTGGGCAAACAAGTATCAG
genomic: TGTCGAAACAGTGCAGTATAACAACATTAAATTTCAAGTCTGGGATTTAGgtaacgacca ... gtttatacagGTGGGCAAACAAGTATCAG
EST: gi|207761436|gb|GD733765.1|GD733765
EST:     GCAGTATAACAACATTAAATTTCAAGTCTGGGATTTAG                         GTGGGCAAACAAGTATCAG
genomic: GCAGTATAACAACATTAAATTTCAAGTCTGGGATTTAGgtaacgacca ... gtttatacagGTGGGCAAACAAGTATCAG
EST: gi|192299620|gb|FG990002.1|FG990002
EST:     TGTCGAAACAGTGCAGTATAACAACATTAAATTTCAAGTCTGGGATTTAG                         GTGGGCAAACAAGTATCAG
genomic: TGTCGAAACAGTGCAGTATAACAACATTAAATTTCAAGTCTGGGATTTAGgtaacgacca ... gtttatacagGTGGGCAAACAAGTATCAG
EST: gi|7042626|gb|AW472520.1|AW472520
EST:     TGTCGAAACAGTGCAGTATAACAACATTAAATTTCAAGTCTGGGATTTAG                         GTGGGCAAACAAGTATCAG
genomic: TGTCGAAACAGTGCAGTATAACAACATTAAATTTCAAGTCTGGGATTTAGgtaacgacca ... gtttatacagGTGGGCAAACAAGTATCAG
EST: gi|192308422|gb|FK000918.1|FK000918
EST:     TGTCGAAACAGTGCAGTATAACAACATTAAATTTCAAGTCTGGGATTTAG                         GTGGGCAAACAAGTA
genomic: TGTCGAAACAGTGCAGTATAACAACATTAAATTTCAAGTCTGGGATTTAGgtaacgacca ... gtttatacagGTGGGCAAACAAGTA
EST: gi|192306665|gb|FG998077.1|FG998077
EST:     TGTCGAAACAGTGCAGTATAACAACATTAAATTTCAAGTCTGGGATTTAG                         GTGGGCAAACAAGTATCAG
genomic: TGTCGAAACAGTGCAGTATAACAACATTAAATTTCAAGTCTGGGATTTAGgtaacgacca ... gtttatacagGTGGGCAAACAAGTATCAG
EST: gi|12488647|gb|BG042170.1|BG042170
EST:     TGTCGAAACAGTGCAGTATAACAACATTAAATTTCAAGTCTGGGATTTAG                         GTGGGCAAACAAGTATCAG
genomic: TGTCGAAACAGTGCAGTATAACAACATTAAATTTCAAGTCTGGGATTTAGgtaacgacca ... gtttatacagGTGGGCAAACAAGTATCAG
EST: gi|192326406|gb|FK017693.1|FK017693
EST:     TGTCGAAACAGTGCAGTATAACAACATTAAATTTCAAGTCTGGGATTTAG                         GTGGGCAAACAAGTATCAG
genomic: TGTCGAAACAGTGCAGTATAACAACATTAAATTTCAAGTCTGGGATTTAGgtaacgacca ... gtttatacagGTGGGCAAACAAGTATCAG
EST: gi|10848119|gb|BF070667.1|BF070667
EST:     TGTCGAAACAGTGCAGTATAACAACATTAAATTTCAAGTCTGGGATT-AG                         GTGGGCAAACAAGTATCAG
genomic: TGTCGAAACAGTGCAGTATAACAACATTAAATTTCAAGTCTGGGATTTAGgtaacgacca ... gtttatacagGTGGGCAAACAAGTATCAG
EST: gi|15813778|gb|BI786053.1|BI786053
EST:     TGTCGAAACAGTGCAGTATAACAACATTAAATTTCAAGTCTGGGATTTAG                         GTGGGCAAACAAGTATCAG
genomic: TGTCGAAACAGTGCAGTATAACAACATTAAATTTCAAGTCTGGGATTTAGgtaacgacca ... gtttatacagGTGGGCAAACAAGTATCAG
EST: gi|9565450|gb|BE474959.1|BE474959
EST:     TGTCGAAACAGTGCAGTATAACAACATTAAATTTCAAGTCTGGGATTTAG                         GTGGGCAAACAAGTATCAG
genomic: TGTCGAAACAGTGCAGTATAACAACATTAAATTTCAAGTCTGGGATTTAGgtaacgacca ... gtttatacagGTGGGCAAACAAGTATCAG
EST: gi|298165965|gb|HO008936.1|HO008936
EST:     TGTCGAAACAGTGCAGTATAACAACATTAAATTTCAAGTCTGGGATTTAG                         GTGGGCAAACAAGTATC
genomic: TGTCGAAACAGTGCAGTATAACAACATTAAATTTCAAGTCTGGGATTTAGgtaacgacca ... gtttatacagGTGGGCAAACAAGTATC