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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCGATGTTGAGAATTTGGAGCATTGCGCTAGGTATCTCAACCAATCGCTCGTCACGTTTGGTTTCCCGGCTTCTCTCGATCTCTTCGCAAATGACCCCgtgagaattgaactgatcccgttctgtctttcatttacattgttttgtttttcgccaatgtgtgagcgtgtgttatgtgaatgatgttgttctggaaaatgtggtag

Basic information

species Glycine max
transcript GLYMA13G00980.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G00980.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os08g14460.1 (Oryza sativa), 5'ss of exon 2
CGCCGATGTTGAGAATTTGGAGCATTGCGCTAGGTATCTCAACCAATCGCTCGTCACGTTTGGTTTCCCGGCTTCTCTCGATCTCTTCGCAAATGACCCCgtgagaattgaactgatcccgttctgtctttcatttacattgttttgtttttcgccaatgtgtgagcgtgtgttatgtga-atgatgttgttctggaaaatgtggtag
||| || |  | |||  | ||||| ||||| ||||| ||||||||  |||||||||| || || |||||||| || |||||||||||||| |  ||||||||  |  |     |  |||   ||| |||  |   | |  || | |  ||| ||    |  ||     | |     |||   |||  ||  | |||    | |     
CGCGGACGCGGGGAACCTCGAGCACTGCGCCAGGTACCTCAACCAGACGCTCGTCACCTTCGGCTTCCCGGCCTCGCTCGATCTCTTCGCCACCGACCCCgtagggttccttttcttcctcctctctctcccccctcc--tgatctactttgcggattttggttctgatttccctagtgccgtgagatt--tgtggggggttta----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7284560|gb|AW597148.1|AW597148
EST:     TCGTCACGTTTGGTTTCCCGGCTTCTCTCGATCTCTTCGCAAATGACCCC                         GTTTCAATTGCGAGGACTTGCAATTGCATTTACTTCTTGCTCCAGCAGAGA
genomic: TCGTCACGTTTGGTTTCCCGGCTTCTCTCGATCTCTTCGCAAATGACCCCgtgagaattg ... aatgtggtagGTTTCAATTGCGAGGACTTGCAATTGCATTTACTTCTTGCTCCAGCAGAGA