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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGTTTTGCGGGTATAATTGTGATATGTCTAGATGAGCTTCTTCAAAAAGGATATGGTCTGGGGTCTGGAATTTCCCTTTTCATAGCAACTAATATCTGgtaaatttctaccctaacgatatatttcctgcttgtaatctataatgttcttgttgtcttctagcaactgctaaccagaatgtttaaccatttatcaaatacttaaaaggaattcccttgtcatttttcag

Basic information

species Glycine max
transcript GLYMA12G35990.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G35990.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G307252_T02 (Zea mays), 5'ss of exon 2
TCTGTTTTGCGGGTATAATTGTGATATGTCTAGATGAGCTTCTTCAAAAAGGATATGGTCTGGGGTCTGGAATTTCCCTTTTCATAGCAACTAATATCTGgtaaatttctaccctaacgatatatttc-ctgcttgtaat-ctataatgttcttgttgtcttctagcaactgctaaccagaatgttt-aaccatttatcaaatacttaaaaggaattcccttgtcatttttcag
| |  ||||| ||||| ||||| || ||||||||||| || || || ||||| |||||| |||| ||||| || || || ||||| || || ||||||||||||   | |       |  | |  ||| || | |    | | | | | | | |    | ||||  | |  | ||   |     ||  ||| | | | |                                   
TTTTCTTTGCTGGTATCATTGTCATCTGTCTAGATGAACTCCTACAGAAAGGCTATGGTTTGGGATCTGGTATCTCTCTGTTCATTGCTACGAATATCTGgtaagcatattaagggcctgtttggttcactacctcagttgccacactttgcctaac-ttttctgcctaaggttagttattcaattcgaactactaacctt---------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254335629|gb|GR847157.1|GR847157
EST:     GGATATGGTCTGGGGTCTGGAATTTCCCTTTTCATAGCAACTAATATCTG                         TGAAAACATTATATGGAAGGCATTTAGTCCCACCACTATTAACAGTGGACG
genomic: GGATATGGTCTGGGGTCTGGAATTTCCCTTTTCATAGCAACTAATATCTGgtaaatttct ... catttttcagTGAAAACATTATATGGAAGGCATTTAGTCCCACCACTATTAACAGTGGACG
EST: gi|254316195|gb|GR827732.1|GR827732
EST:     GGATATGGTCTGGGGTCTGGAATTTCCCTTTTCATAGCAACTAATATCTG                         TGAAAACATTATATGGAAAGGCATTTAGTCCCACCACTATTAACAGTGGAC
genomic: GGATATGGTCTGGGGTCTGGAATTTCCCTTTTCATAGCAACTAATATCTGgtaaatttct ... catttttcagTGAAAACATTATATGGAA-GGCATTTAGTCCCACCACTATTAACAGTGGAC
EST: gi|254347543|gb|GR853792.1|GR853792
EST:     GGATATGGTCTGGGGTCTGGAATTTCCCTTTTCATAGCAACTAATATCTG                         TGAAAACATTATATGGAAGGCATTTAGTCCCACCACTATTAACAGTGGACG
genomic: GGATATGGTCTGGGGTCTGGAATTTCCCTTTTCATAGCAACTAATATCTGgtaaatttct ... catttttcagTGAAAACATTATATGGAAGGCATTTAGTCCCACCACTATTAACAGTGGACG
EST: gi|13562944|gb|BG551164.1|BG551164
EST:     GGAATTTCCCTTTTCATAGCAACTAATATCTG                         TGAAAACATTATATGGAAGGCATTTAGTCCCACCACTATTAACAGTGGACG
genomic: GGAATTTCCCTTTTCATAGCAACTAATATCTGgtaaatttct ... catttttcagTGAAAACATTATATGGAAGGCATTTAGTCCCACCACTATTAACAGTGGACG
EST: gi|298172300|gb|HO019340.1|HO019340
EST:     GGATATGGTCTGGGGTCTGGAATTTCCCTTTTCATAGCAACTAATATCTG                         TGAAAACATTATATGGAAGGCATTTAGTCCCACCACTATTAACAGTGGACG
genomic: GGATATGGTCTGGGGTCTGGAATTTCCCTTTTCATAGCAACTAATATCTGgtaaatttct ... catttttcagTGAAAACATTATATGGAAGGCATTTAGTCCCACCACTATTAACAGTGGACG
EST: gi|254329727|gb|GR839280.1|GR839280
EST:     GGATATGGTCTGGGGTCTGGAATTTCCCTTTTCATAGCAACTAATATCTG                         TGAAAACATTATATGGAAGGCATTTAGTCCCACCACTATTAACAGTGGACG
genomic: GGATATGGTCTGGGGTCTGGAATTTCCCTTTTCATAGCAACTAATATCTGgtaaatttct ... catttttcagTGAAAACATTATATGGAAGGCATTTAGTCCCACCACTATTAACAGTGGACG