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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATCCACTTATTTGTGTAGCTGCTTCAGCTGTCATTGAGAGCTTCCCTGATTTTTTCCGTAGCAAATATAATCCATACGATCGTTCTATAATAGTGACGgtaagataccaatttacttgagatttggatagatctttatagatccaatatggaagcaataaatatattctggattccacttgtgctaaatgcag

Basic information

species Glycine max
transcript GLYMA12G35830.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G35830.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv19s0014g01410.t01 (Vitis vinifera), 5'ss of exon 6
ATATCCACTTATTTGTGTAGCTGCTTCAGCTGTCATTGAGAGCTTCCCTGATTTTTTCCGTAGCAAATATAATCCATACGATCGTTCTATAATAGTGACGgtaagata--ccaatttacttgagatttg----gatagatctttatagatccaatatggaagcaataaatatattctggattccacttgtgctaaatgcag
|||||||||| | ||||| |||||||||||||||||||||||||| || ||| |||| ||   |  |||  ||||  | | |   | | | || || | ||| || |   || || | | |   |||||     |   || |  ||| ||    |     |     ||| ||  | ||       | |||||         
ATATCCACTTGTCTGTGTTGCTGCTTCAGCTGTCATTGAGAGCTTTCCAGATCTTTTTCGAGACCCATACTATCCCAATGCTAACTATTTGATGGTTATGgtgagcttatcccatattcctataatttgctctaagccatttcaataaatattctggctcattgtcaaacattctttg---cttgcctgtgcag-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192332079|gb|FK024567.1|FK024567
EST:     ATTTTTTCCGTAGCAAATATAATCCATACGATCGTTCTATAATAGTGACG                         GTTGCCAAAGTTAT
genomic: ATTTTTTCCGTAGCAAATATAATCCATACGATCGTTCTATAATAGTGACGgtaagatacc ... ctaaatgcagGTTGCCAAAGTTAT