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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAATGTCTTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTGgtactgtttctctcgcttttctgctgtcatgttttaaccactttgacatgcctcattatttgttgccttttctctattaaaatcactattgtagcttctt...

Basic information

species Glycine max
transcript GLYMA12G34820.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G34820.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G30410.2 (Arabidopsis thaliana), 5'ss of exon 4
GAAAATGTCTTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTGgtactgtttctctcgcttttctgctgtcatgttttaaccactttgacatgcctcatta-tttgttgccttttctctattaaaatcactattgtagcttctt
|||||||| |||| ||||||||||||||||||||| || |||| ||| || || ||| | || ||||| ||| | ||       ||||||   |   | |  | ||  |  ||     |      |  | |  | |     |||| ||| |        ||        ||    | | ||    |  
GAAAATGTGTTGGGTGAGTCTAGGATGATGATTCCGGATTGCCACAAACGTCTCGAGTCTGCATTGGCTGACCTCAAGTCCACTTTGgtaaactacattttccattgttattgcttgctaagcgtcggtctagctttatgtattagtttataagaaacgctgagcggtgatttgaagtttaagagca-

upper sequence: GLYMA12G34820.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv15s0021g01180.t01 (Vitis vinifera), 5'ss of exon 3
GAAAATGTCTTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTGgtactgtttctctcgcttttctgctgtcatgttttaaccactttgaca-tgcctcattatttgttgccttttctctattaaaatcactattgtagcttctt
||||||||  ||||||| || ||||||||||||||||| || ||||||||||| |||||| |  | || ||  | ||||||   ||||||   |   | |    |   | || |      | ||   | | | || ||    | |||   |    |  |   |  |    |||  |    |   |   
GAAAATGTGCTGGCTGAATCAAGGATGATGATTCCTGATTGTCGCAAGCGCCTGGAGGCCTCACTAGCTGATCTAAAAGGAACTTTGgtatgataaattttatatagattctttagatgctgaatttcatagtcaatgggctaatatacttaaggtcatggttgatgttttcaaaaccaaattattc-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192304981|gb|FG996113.1|FG996113
EST:     ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTG                         GCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
genomic: ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTGgtactgtttc ... ccattttcagGCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
EST: gi|9564281|gb|BE473790.1|BE473790
EST:     ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTG                         GCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
genomic: ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTGgtactgtttc ... ccattttcagGCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
EST: gi|213597316|gb|DB964389.1|DB964389
EST:     ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTG                         GCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
genomic: ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTGgtactgtttc ... ccattttcagGCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
EST: gi|254336864|gb|GR843043.1|GR843043
EST:     ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTG                         GCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
genomic: ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTGgtactgtttc ... ccattttcagGCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
EST: gi|15812346|gb|BI784621.1|BI784621
EST:     ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTG                         GCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
genomic: ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTGgtactgtttc ... ccattttcagGCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
EST: gi|298179443|gb|HO027914.1|HO027914
EST:     ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTG                         GCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
genomic: ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTGgtactgtttc ... ccattttcagGCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
EST: gi|213603291|gb|DB981948.1|DB981948
EST:     ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTG                         GCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
genomic: ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTGgtactgtttc ... ccattttcagGCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
EST: gi|33387458|gb|CA850665.1|CA850665
EST:     ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTG                         GCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
genomic: ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTGgtactgtttc ... ccattttcagGCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
EST: gi|151410637|gb|EV280452.1|EV280452
EST:     ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTG                         GCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
genomic: ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTGgtactgtttc ... ccattttcagGCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
EST: gi|192332178|gb|FK023827.1|FK023827
EST:     ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTG                         GCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
genomic: ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTGgtactgtttc ... ccattttcagGCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
EST: gi|151406447|gb|EV276262.1|EV276262
EST:     ACTGCCGCAAGCGCCTTGAGGCCACTTTGGCAGACTTGAAAGGATTATTG                         GCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
genomic: ACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTGgtactgtttc ... ccattttcagGCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTGAGATTGATGAAGCT
EST: gi|193483711|gb|FK452842.1|FK452842
EST:     CTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTG                         GCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTG
genomic: CTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTGgtactgtttc ... ccattttcagGCTGAGTTGGAGGAGTCGGATGAGAAGGCCAGTCCTG