Sequence
atgc intronic sequence ATGC exonic sequenceTGGTCCTGTATATAAAGCTCAGATGTCTACTGGCGAGACTGTTGCAGTTAAAGTTCTTGCAACTAATTCTAAGCAAGGGGAGAAAGAATTTCAGACAGAGgtgaagataataatttctcattactttgagatgcatagaagtattgttagctacatatcattttgaaaaatcaaaacacgagaaatacgattttactata...
Basic information
species | Glycine max |
transcript | GLYMA12G34410.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G34410.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G54590.2 (Arabidopsis thaliana), 5'ss of exon 2
TGGTCCTGTATATAAAGCTCAGATGTCTACTGGCGAGACTGTTGCAGTTAAAGTTCTTGCAACTAATTCTAAGCAAGGGGAGAAAGAATTTCAGACAGAGgtgaagataataatttctcattactttgagatgcatagaagtat-tgttagctacatatcattttgaaaaatca-aaacacgagaaatacgattttactata
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TGGACCTGTCTACAAAGCTCAAATGTCTACTGGTGAGATCGTGGCTGTGAAAGTTCTAGCCACTGATTCTAAACAGGGCGAAAAAGAGTTTCAGACAGAGgt-aagata-tatctatggattcatttccgaagaacaagttagtgtgtaaaacatgtagcattaggcagacttttaagcattacaataggctttctgaaatc
upper sequence: GLYMA12G34410.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv19s0014g04960.t01 (Vitis vinifera), 5'ss of exon 2
TGGTCCTGTATATAAAGCTCAGATGTCTACTGGCGAGACTGTTGCAGTTAAAGTTCTTGCAACTAATTCTAAGCAAGGGGAGAAAGAATTTCAGACAGAGgtgaagataataatttctcattactttgagatgcatagaagtattgttagctacatatcattttgaaaaatcaaa---acacgagaaatacgattttactata
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TGGTCCTGTTTATAAAGCTCAGATGTCAACCGGTGAGACGGTTGCTGTTAAAGTGCTTGCAACTGACTCTAAGCAAGGGGAGAAGGAGTTCCAAACAGAGgtaataat--taatttttaggccatgttagataca-agtattcttcctgaataagttccaacacacatagacatatgtgtaccttgggcatgaacattatttgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254319138|gb|GR828866.1|GR828866EST: AAGTTCTTGCAACTAATTCTAAGCAAGGGGAGAAAGAATTTCAGACAGAG GTTATGTTGTTGGGAAGGTTACATCATAGAAATCTGGTCAATTTGGTCGGG
genomic: AAGTTCTTGCAACTAATTCTAAGCAAGGGGAGAAAGAATTTCAGACAGAGgtgaagataa ... tttttctcagGTTATGTTGTTGGGAAGGTTACATCATAGAAATCTGGTCAATTTGGTCGGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGTCCTGTATATAAAGCTCAGATGTCTACTGGCGAGACTGTTGCAGTTAAAGTTCTTGCAACTAATTCTAAGCAAGGGGAGAAAGAATTTCAGACAGAGgtgaagataataatttctcattactttgagatgcatagaagtattgttagctacatatcattttgaaaaatcaaaacacgagaaatacgattttactata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA