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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCATCAGTTACATGGCCGAACGTGTTGTTGGCACTGGATCATTTGGCATTGTTTTCCAGgtaaggataagtgaagtaattaccattaggtgataactgttcctactttgctttccctgctgtcaagtatctcatattgtttcacacccttgggttatgttcctttttgacctgaaacaaag

Basic information

species Glycine max
transcript GLYMA12G33950.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G33950.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G045330_T02 (Zea mays), 5'ss of exon 3
ACCATCAGTTACATGGCCGAACGTGTTGTTGGCACTGGATCATTTGGCATTGTTTTCCAGgtaagg-----ataagtgaagtaattaccattaggtgataactgttcctactttgctttccctgctgtcaagtatctcatattgtttcacacccttgggttatgttcctttttgacctgaaacaaag
||||||||||||||||| |||||||| || ||||| || |||||||| || || ||||||||| ||          ||  | |     |  |   |  |  |||  ||||     |  |   || ||  | ||       |||| |||   |   | |                             
ACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCGTCTTCCAGgtatggtgctcggccatgggggagggggctcttctttgtggctgcgccta----acactggttgatgcaacgtgcactgaattggttctggcatgtag-----------------------------

upper sequence: GLYMA12G33950.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G472625_T01 (Zea mays), 5'ss of exon 3
ACCATCAGTTACATGGCCGAACGTGTTGTTGGCACTGGATCATTTGGCATTGTTTTCCAGgtaaggataagtgaagtaattaccattaggtgataactgttcctactttgctttccctgctgtcaagtatctcatattgtttcacacccttgggttatgttcctttttgacctgaaacaaag
||||||||||||||||| |||||||| || || || || |||||||| || || ||||||||| ||    |    || ||       || |  |   ||| | | | |  | ||   || ||| |  |       |||   |   ||   | |                             
ACCATCAGTTACATGGCAGAACGTGTCGTGGGTACGGGCTCATTTGGGATCGTCTTCCAGgtatggt---gcttggtcatggg----agctcttctttgtacgtgcctaacatttgttgatgtaacatgcactgaattaactttgacatgtag-----------------------------

upper sequence: GLYMA12G33950.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G30980.1 (Arabidopsis thaliana), 5'ss of exon 3
ACCATCAGTTACATGGCCGAACGTGTTGTTGGCACTGGATCATTTGGCATTGTTTTCCAGgtaaggataagtgaagtaattaccattaggtgataactgttcctactttgctttccctgctgtcaagtatctcatattgtttcacacccttgggttatgttcctttttgacctgaaacaaag
||||| |||||||||||||||||||||||||| || |||||||| || ||||| |||||||||    | | ||   |  | ||  |     |  || ||   ||  ||  |||||| | |||   ||  | | |  ||      ||  || |                              
ACCATTAGTTACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAGgta----tcattgtgcttgtcactgtctacaggcaaatgg--ctttttgtctttcctttctgatcagattgttaacttac----cattctag------------------------------

upper sequence: GLYMA12G33950.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv12s0028g01810.t01 (Vitis vinifera), 5'ss of exon 3
ACCATCAGTTACATGGCCGAACGTGTTGTTGGCACTGGATCATTTGGCATTGTTTTCCAGgtaaggataagtgaagtaattaccattaggtgataactgttcctactttgctttccctgctgtcaagtatctcatattgtttcacacccttgggttatgttcctttttgacctgaaacaaag
||||||||||||||||| || ||  |||| ||||||||||| ||||| |||||||| ||||||    ||    |     || | |  |  |  | | | |||  ||    || |   |  | | |||  |||| | |   ||    ||                                  
ACCATCAGTTACATGGCAGAGCGCATTGTAGGCACTGGATCGTTTGGAATTGTTTTTCAGgtactagtataccagt---tttctagcaaat--tcagtattctcacccgtctctttatcat-tgaaggctctcttgtaacttttttccag--------------------------------

upper sequence: GLYMA12G33950.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S306_43V6.2 (Physcomitrella patens), 5'ss of exon 4
ACCATCAGTTACATGGCCGAACGTGTTGTTGGCACTGGATCATTTGGCATTGTTTTCCAGgtaaggataag---tgaagtaattaccattaggtg--ataactgttcctactttgctttc-------cctgctgtcaagtatctcatattgttt----cacacccttgggttatgttcctttttgacctgaaacaaag--------------------------------------------------
|| ||||| ||   ||| |||||||||||||||||||||||||| || ||||| |||||||| |   | ||   | |  |   | | ||| || |   ||||   | || |||| |  ||       |||  | |  | | |    | | ||         |   || |   |||||  ||     |  | || |                                                     
ACGATCAGCTATTCGGCAGAACGTGTTGTTGGCACTGGATCATTCGGGATTGTCTTCCAGgtgattgttaggattaagctctgttcaatttggcgctgtaacgaattctcctttccgctcagacagacctcgtatggaatctggtgtgtggtccgcgatggaggtttcgcacatgtttgttcgcctctcggaatagctcatacggaaagataactgaatgatttttgcgtgttaatgtgtgttgccag

upper sequence: GLYMA12G33950.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S60_100V6.1 (Physcomitrella patens), 5'ss of exon 4
ACCATCAGTTACATGGCCGAACGTGTTGTTGGCACTGGATCATTTGGCATTGTTTTCCAGgtaaggataagtgaagtaattaccattaggtgataactgttcctactttgctttccctgctgtcaagtatctcatattgtttcacaccct-tgggttatgttcc--tttttgacctgaaacaaag------------------------------------------------------------------------------------
|| || || |||   || ||||| |||||||||||||||||||| || || |||||||||||||  || |    | | ||  | |||      |||||| | |||| || |||||   |  |     |||     ||  |   |||  || |  || |  |||   | | |  |  |  |  |||                                                                                    
ACTATTAGCTACTGTGCAGAACGAGTTGTTGGCACTGGATCATTCGGGATCGTTTTCCAGgtaattatcacc--attgatccctattt-----taactgatgctacgtt-ctttcgtagtagatttatattcttcatc-tcggacagactgtatgtgaccttctggtatgtatcgcgggatgaaggcatgcggcgcatctgtccacgtctaacaaaagttggctcaggaatagaattgattgaattgcgtgttcactcaaatttatcag

upper sequence: GLYMA12G33950.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S74_168V6.1 (Physcomitrella patens), 5'ss of exon 3
ACCATCAGTTACATGGCCGAACGTGTTGTTGGCACTGGATCATTTGGCATTGTTTTCCAGgtaaggataagtgaagtaattac-cattaggtgataactgttcctactttgct-ttccctgctgtcaagtatc-tcatattgtttcacacccttgggttatgttcctttttgacctgaaacaaag
|| ||||||||    || ||||||||||| ||||| ||||||||||| || || ||||||||||   |  |  |||   | || | |   ||   |||  ||  || ||||   |||  || ||    | |   |  | ||||| |          ||  |                        
ACTATCAGTTATTCAGCAGAACGTGTTGTCGGCACAGGATCATTTGGGATCGTGTTCCAGgtaa---tttgctaagccctaactcctcgagtatgaacctttggtagtttgtagttcggtgatgctgcgcacggtggtgttgttaccagatgcacagtagtac----------------------